Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 13 curated entries in PaperBLAST's database that match '1.1.1.203' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_3958: UDP-glucose 4-epimerase (EC 5.1.3.2)
is similar to:
PaperBLAST

URODH_PSEPK / Q88NN6: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas putida
PP_1171: Uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida
Q88NN6: uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida

60% id,
100% cov

PS417_17360: D-galacturonate dehydrogenase (EC 1.1.1.203) from Pseudomonas simiae

59% id,
99% cov

URODH_PSESM / Q888H1: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas syringae
udh / Q888H1: uronic acid dehydrogenase subunit (EC 1.1.1.203) from Pseudomonas syringae
Q888H1: uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas syringae

59% id,
98% cov

More...

Ac3H11_1900: UDP-glucose 4-epimerase (EC 5.1.3.2)
is similar to:
PaperBLAST

URODH_AGRFC / Q7CRQ0: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Agrobacterium fabrum
udh / Q7CRQ0: D-uronate dehydrogenase moomer (EC 1.1.1.203) from Agrobacterium fabrum
Q7CRQ0: uronate dehydrogenase (EC 1.1.1.203) from Agrobacterium tumefaciens

31% id,
51% cov

Ac3H11_2257: Short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

HSERO_RS23040: D-galacturonate dehydrogenase (EC 1.1.1.203) from Herbaspirillum seropedicae

26% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory