Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.59' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_3320: Choline dehydrogenase (EC 1.1.99.1)
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

69% id,
96% cov

Ac3H11_4659: Choline dehydrogenase (EC 1.1.99.1)
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

41% id,
93% cov

Ac3H11_1497: Choline dehydrogenase (EC 1.1.99.1)
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

37% id,
94% cov

Ac3H11_2497: Alcohol dehydrogenase (EC 1.1.1.1)
is similar to:
PaperBLAST

pydE / A0A0A3J5T1: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59; EC 1.1.1.298) from Ureibacillus massiliensis

29% id,
97% cov

Ac3H11_4515: NADH-dependent butanol dehydrogenase A (EC 1.1.1.-)
is similar to:
PaperBLAST

pydE / A0A0A3J5T1: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59; EC 1.1.1.298) from Ureibacillus massiliensis

27% id,
81% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory