Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 6 curated entries in PaperBLAST's database that match '1.1.1.60' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_1088: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
is similar to:
PaperBLAST

glxR / P77161: tartronate semialdehyde reductase 2 (EC 1.1.1.60) from Escherichia coli

69% id,
100% cov

GARR_ECOLI / P0ABQ2: 2-hydroxy-3-oxopropionate reductase; Tartronate semialdehyde reductase; TSAR; EC 1.1.1.60 from Escherichia coli
YhaE / b3125: tartronate semialdehyde reductase (EC 1.1.1.60) from Escherichia coli
garR / P0ABQ2: tartronate semialdehyde reductase (EC 1.1.1.60) from Escherichia coli

44% id,
99% cov

Q8ZLV8: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) from Salmonella enterica

44% id,
99% cov

Ac3H11_1664: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
is similar to:
PaperBLAST

glxR / P77161: tartronate semialdehyde reductase 2 (EC 1.1.1.60) from Escherichia coli

41% id,
100% cov

Q8ZLV8: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) from Salmonella enterica

38% id,
95% cov

GARR_ECOLI / P0ABQ2: 2-hydroxy-3-oxopropionate reductase; Tartronate semialdehyde reductase; TSAR; EC 1.1.1.60 from Escherichia coli
YhaE / b3125: tartronate semialdehyde reductase (EC 1.1.1.60) from Escherichia coli
garR / P0ABQ2: tartronate semialdehyde reductase (EC 1.1.1.60) from Escherichia coli

38% id,
95% cov

Ac3H11_2362: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
is similar to:
PaperBLAST

Q8ZLV8: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) from Salmonella enterica

37% id,
97% cov

GARR_ECOLI / P0ABQ2: 2-hydroxy-3-oxopropionate reductase; Tartronate semialdehyde reductase; TSAR; EC 1.1.1.60 from Escherichia coli
YhaE / b3125: tartronate semialdehyde reductase (EC 1.1.1.60) from Escherichia coli
garR / P0ABQ2: tartronate semialdehyde reductase (EC 1.1.1.60) from Escherichia coli

36% id,
97% cov

glxR / P77161: tartronate semialdehyde reductase 2 (EC 1.1.1.60) from Escherichia coli

32% id,
97% cov

Ac3H11_4470: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
is similar to:
PaperBLAST

glxR / P77161: tartronate semialdehyde reductase 2 (EC 1.1.1.60) from Escherichia coli

34% id,
97% cov

GARR_ECOLI / P0ABQ2: 2-hydroxy-3-oxopropionate reductase; Tartronate semialdehyde reductase; TSAR; EC 1.1.1.60 from Escherichia coli
YhaE / b3125: tartronate semialdehyde reductase (EC 1.1.1.60) from Escherichia coli
garR / P0ABQ2: tartronate semialdehyde reductase (EC 1.1.1.60) from Escherichia coli

34% id,
95% cov

Q8ZLV8: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) from Salmonella enterica

33% id,
95% cov

Ac3H11_3739: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
is similar to:
PaperBLAST

Q8ZLV8: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) from Salmonella enterica

30% id,
94% cov

GARR_ECOLI / P0ABQ2: 2-hydroxy-3-oxopropionate reductase; Tartronate semialdehyde reductase; TSAR; EC 1.1.1.60 from Escherichia coli
YhaE / b3125: tartronate semialdehyde reductase (EC 1.1.1.60) from Escherichia coli
garR / P0ABQ2: tartronate semialdehyde reductase (EC 1.1.1.60) from Escherichia coli

30% id,
95% cov

glxR / P77161: tartronate semialdehyde reductase 2 (EC 1.1.1.60) from Escherichia coli

28% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory