Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 7 curated entries in PaperBLAST's database that match '1.1.3.2' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_2838: L-lactate dehydrogenase (EC 1.1.2.3)
is similar to:
PaperBLAST

Q8Z0C8: L-lactate oxidase (EC 1.1.3.2) from Nostoc sp.

51% id,
97% cov

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

42% id,
96% cov

lctO / D4YFM2: lactate oxidase monomer (EC 1.1.3.2) from Aerococcus viridans
D4YFM2: L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

33% id,
99% cov

More...

Ac3H11_1623: L-lactate dehydrogenase (EC 1.1.2.3)
is similar to:
PaperBLAST

Q8Z0C8: L-lactate oxidase (EC 1.1.3.2) from Nostoc sp.

40% id,
96% cov

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

36% id,
96% cov

lctO / D4YFM2: lactate oxidase monomer (EC 1.1.3.2) from Aerococcus viridans
D4YFM2: L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

31% id,
93% cov

More...

Ac3H11_1767: L-lactate dehydrogenase (EC 1.1.2.3)
is similar to:
PaperBLAST

Q8Z0C8: L-lactate oxidase (EC 1.1.3.2) from Nostoc sp.

37% id,
96% cov

lctO / D4YFM2: lactate oxidase monomer (EC 1.1.3.2) from Aerococcus viridans
D4YFM2: L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

27% id,
91% cov

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

27% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory