Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 8 curated entries in PaperBLAST's database that match '1.3.1.78' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_2575: Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43)
is similar to:
PaperBLAST

tyrAa / P73906: arogenate dehydrogenase monomer (EC 1.3.1.78) from Synechocystis sp.
P73906: arogenate dehydrogenase (NADP+) (EC 1.3.1.78) from Synechocystis sp.

29% id,
90% cov

Ac3H11_2346: 2-dehydropantoate 2-reductase (EC 1.1.1.169)
is similar to:
PaperBLAST

TYRA1_ARATH / Q944B6: Arogenate dehydrogenase 1, chloroplastic; TYRATC; TyrAAT1; EC 1.3.1.78 from Arabidopsis thaliana
TyrAAT1 / Q944B6: arogenate dehydrogenase (EC 1.3.1.78) from Arabidopsis thaliana
Q944B6: arogenate dehydrogenase (NADP+) (EC 1.3.1.78) from Arabidopsis thaliana

29% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory