Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 41 curated entries in PaperBLAST's database that match '1.3.3.6' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_3533: Glutaryl-CoA dehydrogenase (EC 1.3.99.7)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

37% id,
88% cov

ACOX2_ARATH / O65201: Acyl-coenzyme A oxidase 2, peroxisomal; AOX 2; Long-chain acyl-CoA oxidase; AtCX2; EC 1.3.3.6 from Arabidopsis thaliana
ACX2 / O65201: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
O65201: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

25% id,
55% cov

ACOX2_CUCMA / O64894: Acyl-coenzyme A oxidase, peroxisomal; AOX; Long-chain acyl-CoA oxidase; EC 1.3.3.6 from Cucurbita maxima

24% id,
51% cov

Ac3H11_2991: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

30% id,
85% cov

Ac3H11_1933: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

28% id,
84% cov

J7K6M3: acyl-CoA oxidase (EC 1.3.3.6) from Prunus persica

24% id,
51% cov

ACOX2_ARATH / O65201: Acyl-coenzyme A oxidase 2, peroxisomal; AOX 2; Long-chain acyl-CoA oxidase; AtCX2; EC 1.3.3.6 from Arabidopsis thaliana
ACX2 / O65201: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
O65201: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

21% id,
54% cov

More...

Ac3H11_2359: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

28% id,
84% cov

Ac3H11_2720: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

26% id,
90% cov

Q33DR1: acyl-CoA oxidase (EC 1.3.3.6) from Arthrobacter sp.

24% id,
54% cov

Q33DR0: acyl-CoA oxidase (EC 1.3.3.6) from Paenarthrobacter ureafaciens

24% id,
53% cov

More...

Ac3H11_2996: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

27% id,
85% cov

ACOX2_CUCMA / O64894: Acyl-coenzyme A oxidase, peroxisomal; AOX; Long-chain acyl-CoA oxidase; EC 1.3.3.6 from Cucurbita maxima

24% id,
53% cov

ACOX2_ARATH / O65201: Acyl-coenzyme A oxidase 2, peroxisomal; AOX 2; Long-chain acyl-CoA oxidase; AtCX2; EC 1.3.3.6 from Arabidopsis thaliana
ACX2 / O65201: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
O65201: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

23% id,
51% cov

Ac3H11_1925: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

28% id,
79% cov

Ac3H11_1928: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

24% id,
84% cov

Ac3H11_4557: Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

27% id,
74% cov

Ac3H11_3113: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9)
is similar to:
PaperBLAST

fabX / O25465: decanoate oxidase (EC 1.3.3.6; EC 5.3.3.14) from Helicobacter pylori

28% id,
45% cov

Ac3H11_3364: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9)
is similar to:
PaperBLAST

fabX / O25465: decanoate oxidase (EC 1.3.3.6; EC 5.3.3.14) from Helicobacter pylori

32% id,
35% cov

Ac3H11_2717: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

27% id,
42% cov

Ac3H11_2718: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

26% id,
37% cov

Ac3H11_1711: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
is similar to:
PaperBLAST

Mlut_11700 / C5CBS9: acyl coA dehydrogenase (EC 1.3.3.6) from Micrococcus luteus

23% id,
31% cov

Q33DR1: acyl-CoA oxidase (EC 1.3.3.6) from Arthrobacter sp.

34% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

139163-140701 (frame +2) on scaffold5/16
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Also see hits to annotated proteins above

23% id,
92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory