Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 108 curated entries in PaperBLAST's database that match '1.4.1.2'.

These curated entries have 87 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_4091: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

60% id,
99% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

40% id,
90% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

39% id,
93% cov

More...

Ac3H11_167: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
is similar to:
PaperBLAST

P33195: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Escherichia coli

57% id,
99% cov

Q94B78: glycine cleavage system (subunit 4/5) (EC 1.4.1.27) from Arabidopsis thaliana

54% id,
93% cov

P26969: glycine cleavage system (subunit 3/4) (EC 1.4.1.27) from Pisum sativum

54% id,
91% cov

More...

Ac3H11_315: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
is similar to:
PaperBLAST

Q9TVN3: glutamate dehydrogenase (EC 1.4.1.2) from Entodinium caudatum

55% id,
100% cov

DHE2_CLOSY / P24295: NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Clostridium symbiosum
P24295: glutamate dehydrogenase (EC 1.4.1.2) from [Clostridium] symbiosum

52% id,
98% cov

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

35% id,
94% cov

More...

Ac3H11_3282: NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
is similar to:
PaperBLAST

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

55% id,
98% cov

Q43314: glutamate dehydrogenase (EC 1.4.1.2); glutamate dehydrogenase [NAD(P)+] (EC 1.4.1.3) from Arabidopsis thaliana

50% id,
95% cov

P93541: glutamate dehydrogenase (EC 1.4.1.2) from Solanum lycopersicum

50% id,
93% cov

More...

Ac3H11_166: Glycine cleavage system H protein
is similar to:
PaperBLAST

P0A6T9: glycine cleavage system (subunit 2/3) (EC 1.4.1.27) from Escherichia coli

58% id,
91% cov

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

44% id,
88% cov

GCSH / A8HYD5: glycine cleavage system H protein (EC 1.4.1.27) from Chlamydomonas reinhardtii

50% id,
72% cov

More...

Ac3H11_2465: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)
is similar to:
PaperBLAST

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

52% id,
91% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

51% id,
92% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

48% id,
92% cov

More...

Ac3H11_165: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
is similar to:
PaperBLAST

P28337: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Gallus gallus

44% id,
95% cov

P48728: glycine cleavage system (subunit 2/4) (EC 1.4.1.27) from Homo sapiens

43% id,
92% cov

P49364: glycine cleavage system (subunit 1/4) (EC 1.4.1.27) from Pisum sativum

42% id,
92% cov

More...

Ac3H11_1554: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
is similar to:
PaperBLAST

B0F465: glycine cleavage system (subunit 4/5) (EC 1.4.1.27) from Paratrimastix pyriformis

39% id,
98% cov

Q91W43: glycine cleavage system (EC 1.4.1.27) from Mus musculus

32% id,
41% cov

P15505: glycine cleavage system (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Gallus gallus

31% id,
41% cov

More...

Ac3H11_4615: Mercuric ion reductase (EC 1.16.1.1)
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

31% id,
98% cov

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

29% id,
98% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

31% id,
92% cov

More...

Ac3H11_1553: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
is similar to:
PaperBLAST

P33195: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Escherichia coli

37% id,
45% cov

Q94B78: glycine cleavage system (subunit 4/5) (EC 1.4.1.27) from Arabidopsis thaliana

40% id,
41% cov

P15505: glycine cleavage system (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Gallus gallus

41% id,
39% cov

More...

Ac3H11_4711: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
is similar to:
PaperBLAST

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

24% id,
64% cov

Ac3H11_340: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

29% id,
27% cov

Ac3H11_149: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

37% id,
11% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

37% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

52054-52461 (frame +1) on scaffold5/35
is similar to:
PaperBLAST

P0A6T9: glycine cleavage system (subunit 2/3) (EC 1.4.1.27) from Escherichia coli
Also see hits to annotated proteins above

55% id,
97% cov

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.
Also see hits to annotated proteins above

43% id,
92% cov

GDH1 / P25855: glycine cleavage system H protein 1 (EC 1.4.1.27) from Arabidopsis thaliana
P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana
Also see hits to annotated proteins above

44% id,
80% cov

More...

50792-52000 (frame +2) on scaffold5/35
is similar to:
PaperBLAST

P28337: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Gallus gallus
Also see hits to annotated proteins above

43% id,
98% cov

B0F460: glycine cleavage system (subunit 1/5) (EC 1.4.1.27) from Paratrimastix pyriformis
Also see hits to annotated proteins above

39% id,
93% cov

428030-429574 (frame +2) on scaffold5/0
is similar to:
PaperBLAST

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens
Also see hits to annotated proteins above

31% id,
15% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory