Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 22 curated entries in PaperBLAST's database that match '2.3.3.14' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_530: 2-isopropylmalate synthase (EC 2.3.3.13)
is similar to:
PaperBLAST

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

47% id,
94% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

40% id,
90% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

36% id,
98% cov

More...

Ac3H11_5000: 2-isopropylmalate synthase (EC 2.3.3.13)
is similar to:
PaperBLAST

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

26% id,
90% cov

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

24% id,
95% cov

A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

24% id,
90% cov

More...

Ac3H11_370: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
is similar to:
PaperBLAST

HOSA_SULAC / Q4J989: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfolobus acidocaldarius
Q4J989: homocitrate synthase (EC 2.3.3.14) from Sulfolobus acidocaldarius

26% id,
62% cov

HOSA_SULTO / Q971S5: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfurisphaera tokodaii

25% id,
62% cov

Ac3H11_3018: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
is similar to:
PaperBLAST

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

22% id,
67% cov

HOSA_SULTO / Q971S5: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfurisphaera tokodaii

24% id,
60% cov

HOSA_SULAC / Q4J989: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfolobus acidocaldarius
Q4J989: homocitrate synthase (EC 2.3.3.14) from Sulfolobus acidocaldarius

24% id,
57% cov

Ac3H11_4530: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
is similar to:
PaperBLAST

M1U949: homocitrate synthase (EC 2.3.3.14) from Flammulina velutipes

27% id,
51% cov

Ac3H11_199: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
is similar to:
PaperBLAST

HOSC_YEAST / P48570: Homocitrate synthase, cytosolic isozyme; HCS; EC 2.3.3.14 from Saccharomyces cerevisiae
LYS20 / P48570: homocitrate synthase (EC 2.3.3.14) from Saccharomyces cerevisiae
P48570: homocitrate synthase (EC 2.3.3.14) from Saccharomyces cerevisiae

27% id,
50% cov

HOSM_YEAST / Q12122: Homocitrate synthase, mitochondrial; HCS; EC 2.3.3.14 from Saccharomyces cerevisiae
LYS21 / Q12122: homocitrate synthase (EC 2.3.3.14) from Saccharomyces cerevisiae
Q12122: homocitrate synthase (EC 2.3.3.14) from Saccharomyces cerevisiae

27% id,
49% cov

HOSA_SULAC / Q4J989: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfolobus acidocaldarius
Q4J989: homocitrate synthase (EC 2.3.3.14) from Sulfolobus acidocaldarius

28% id,
47% cov

More...

Ac3H11_4553: Transcriptional regulator, AsnC family
is similar to:
PaperBLAST

HOSA_SULTO / Q971S5: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfurisphaera tokodaii

29% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory