Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 3 curated entries in PaperBLAST's database that match '2.6.1.113' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_4342: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

36% id,
96% cov

Ac3H11_4179: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

29% id,
99% cov

Ac3H11_1332: Acetylornithine aminotransferase (EC 2.6.1.11)
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

34% id,
52% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory