Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 15 curated entries in PaperBLAST's database that match '2.7.1.12' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_3229: Gluconokinase (EC 2.7.1.12)
is similar to:
PaperBLAST

Q8NMT0: gluconokinase (EC 2.7.1.12) from Corynebacterium glutamicum

43% id,
98% cov

RR42_RS06130: Gluconokinase (EC 2.7.1.12) from Cupriavidus basilensis

42% id,
95% cov

BPHYT_RS16720: Gluconokinase (EC 2.7.1.12) from Burkholderia phytofirmans

44% id,
82% cov

More...

Ac3H11_3228: Tripartite ATP-independent periplasmic transporter, DctQ component
is similar to:
PaperBLAST

Psest_2123: fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter from Pseudomonas stutzeri

38% id,
41% cov

Ac3H11_2072: TRAP-type C4-dicarboxylate transport system, small permease component
is similar to:
PaperBLAST

Psest_2123: fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter from Pseudomonas stutzeri

33% id,
42% cov

Ac3H11_3521: TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter
is similar to:
PaperBLAST

Psest_2123: fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter from Pseudomonas stutzeri

35% id,
38% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory