Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 41 curated entries in PaperBLAST's database that match '2.7.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_2067: Glucokinase (EC 2.7.1.2)
is similar to:
PaperBLAST

GLK_ECOLI / P0A6V8: Glucokinase; Glucose kinase; EC 2.7.1.2 from Escherichia coli
Glk / b2388: glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) from Escherichia coli

42% id,
95% cov

PS417_22685: Glucokinase (EC 2.7.1.2) from Pseudomonas simiae

38% id,
98% cov

A0A3G4RI75: glucokinase (EC 2.7.1.2) from Methylomonas methanica

31% id,
98% cov

More...

Ac3H11_2882: FIG01198523: hypothetical protein
is similar to:
PaperBLAST

Q8RDE9: glucokinase (EC 2.7.1.2) from Caldanaerobacter subterraneus

31% id,
99% cov

B1VZT1: glucokinase (EC 2.7.1.2) from Streptomyces griseus

30% id,
100% cov

GLK_STRCO / P0A4E1: Glucokinase; Glucose kinase; ORF 3; EC 2.7.1.2 from Streptomyces coelicolor
glkA: glucokinase; EC 2.7.1.2 from Streptomyces coelicolor
P0A4E1: glucokinase (EC 2.7.1.2) from Streptomyces coelicolor

29% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

64269-65528 (frame +3) on scaffold5/26
is similar to:
PaperBLAST

glk: glucokinase; EC 2.7.1.2 from Bacillus megaterium
O31392: glucokinase (EC 2.7.1.2) from Priestia megaterium
Also see hits to annotated proteins above

24% id,
98% cov

glcK / GI|1303865: glucokinase; EC 2.7.1.2 from Bacillus subtilis
Also see hits to annotated proteins above

22% id,
55% cov

GLK_BACSU / P54495: Glucokinase; Glucose kinase; EC 2.7.1.2 from Bacillus subtilis
P54495: glucokinase (EC 2.7.1.2) from Bacillus subtilis
Also see hits to annotated proteins above

22% id,
55% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory