Curated BLAST for Genomes


Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 9 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_2882: FIG01198523: hypothetical protein
is similar to:

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC; EC; EC from Bacteroides fragilis

29% id,
95% cov

Mak / b0394: fructokinase (EC; EC from Escherichia coli
mak / P23917: fructokinase (EC; EC from Escherichia coli

26% id,
99% cov

Ac3H11_3039: Transcriptional regulator FrcR for fructose utilization, ROK family
is similar to:

SMc03109: Mannokinase (EC from Sinorhizobium meliloti

33% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory