Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 38 curated entries in PaperBLAST's database that match '2.7.6.1' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_3452: Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)
is similar to:
PaperBLAST

KPRS_ECOLI / P0A717: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Escherichia coli
DnaR / b1207: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Escherichia coli
prs / P0A717: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Escherichia coli
P0A719: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Escherichia coli

65% id,
99% cov

KPRS_SALTY / P0A1V6: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Salmonella typhimurium

65% id,
99% cov

KPRS_BACSU / P14193: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PPRibP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Bacillus subtilis

55% id,
99% cov

More...

Ac3H11_2203: Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)
is similar to:
PaperBLAST

KPRS_METJA / Q58761: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Methanocaldococcus jannaschii
Q58761: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Methanocaldococcus jannaschii

32% id,
93% cov

Q97Z86: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Saccharolobus solfataricus

32% id,
89% cov

A3MV85: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Pyrobaculum calidifontis

31% id,
92% cov

More...

Ac3H11_3895: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy
is similar to:
PaperBLAST

A3MV85: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Pyrobaculum calidifontis

30% id,
51% cov

Ac3H11_4267: Adenine phosphoribosyltransferase (EC 2.4.2.7)
is similar to:
PaperBLAST

KPRS_THEKO / O52958: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Thermococcus kodakarensis

39% id,
32% cov

Q97Z86: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Saccharolobus solfataricus

29% id,
40% cov

A3MV85: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Pyrobaculum calidifontis

32% id,
28% cov

Ac3H11_2608: Amidophosphoribosyltransferase (EC 2.4.2.14)
is similar to:
PaperBLAST

KPRS_THEKO / O52958: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Thermococcus kodakarensis

26% id,
38% cov

Q5SHU3: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Thermus thermophilus

24% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory