Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 3 curated entries in PaperBLAST's database that match '3.1.1.110' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_615: L-arabinolactonase (EC 3.1.1.15)
is similar to:
PaperBLAST

XYLC_CAUVC / Q9A9Z1: D-xylonolactone lactonase; Xylono-1,5-lactonase; EC 3.1.1.110 from Caulobacter vibrioides
xylC / A0A0H3C6P8: xylono-1,5-lactonase (EC 3.1.1.110) from Caulobacter vibrioides
Q9A9Z1: xylono-1,5-lactonase (EC 3.1.1.110) from Caulobacter vibrioides

40% id,
98% cov

Ac3H11_2081: Gluconolactonase (EC 3.1.1.17)
is similar to:
PaperBLAST

XYLC_CAUVC / Q9A9Z1: D-xylonolactone lactonase; Xylono-1,5-lactonase; EC 3.1.1.110 from Caulobacter vibrioides
xylC / A0A0H3C6P8: xylono-1,5-lactonase (EC 3.1.1.110) from Caulobacter vibrioides
Q9A9Z1: xylono-1,5-lactonase (EC 3.1.1.110) from Caulobacter vibrioides

36% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory