Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 15 curated entries in PaperBLAST's database that match '3.5.1.18' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_2298: N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)
is similar to:
PaperBLAST

DAPE_NEIMB / Q9JYL2: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Neisseria meningitidis

58% id,
99% cov

DAPE_VIBCH / Q9KQ52: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Vibrio cholerae
Q9KQ52: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Vibrio cholerae

57% id,
99% cov

DAPE_ECOLI / P0AED7: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Escherichia coli
MsgB / b2472: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Escherichia coli
dapE / RF|NP_416967: succinyl-diaminopimelate desuccinylase; EC 3.5.1.18 from Escherichia coli
dapE / P0AED7: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Escherichia coli

54% id,
99% cov

More...

Ac3H11_4519: Acetylornithine deacetylase (EC 3.5.1.16)
is similar to:
PaperBLAST

DAPE_HAEIN / P44514: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Haemophilus influenzae
dapE / P44514: N-succinyl-L,L-diaminopimelate desuccinylase subunit (EC 3.5.1.18) from Haemophilus influenzae
P44514: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Haemophilus influenzae

27% id,
89% cov

DAPE_VIBCH / Q9KQ52: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Vibrio cholerae
Q9KQ52: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Vibrio cholerae

27% id,
90% cov

DAPE_NEIMB / Q9JYL2: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Neisseria meningitidis

26% id,
91% cov

More...

Ac3H11_1093: Acetylornithine deacetylase (EC 3.5.1.16)
is similar to:
PaperBLAST

DAPE_HELPY / O25002: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Helicobacter pylori

23% id,
99% cov

Ac3H11_4286: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
is similar to:
PaperBLAST

DAPE_VIBCH / Q9KQ52: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Vibrio cholerae
Q9KQ52: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Vibrio cholerae

23% id,
85% cov

DAPE_ECOLI / P0AED7: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Escherichia coli
MsgB / b2472: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Escherichia coli
dapE / RF|NP_416967: succinyl-diaminopimelate desuccinylase; EC 3.5.1.18 from Escherichia coli
dapE / P0AED7: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Escherichia coli

28% id,
41% cov

DAPE_SALTY / Q8ZN75: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; Aspartyl peptidase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Salmonella typhimurium

28% id,
41% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory