Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 31 curated entries in PaperBLAST's database that match '3.5.1.9' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_1158: Kynurenine formamidase, bacterial (EC 3.5.1.9)
is similar to:
PaperBLAST

KYNB_CUPMC / P0C8P4: Kynurenine formamidase; KFA; KFase; Arylformamidase; N-formylkynurenine formamidase; FKF; EC 3.5.1.9 from Cupriavidus metallidurans
kynB: kynurenine formamidase; EC 3.5.1.9 from Ralstonia metallidurans

59% id,
99% cov

KYNB_PSEAE / Q9I234: Kynurenine formamidase; KFA; KFase; Arylformamidase; N-formylkynurenine formamidase; FKF; EC 3.5.1.9 from Pseudomonas aeruginosa
kynB: kynurenine formamidase; EC 3.5.1.9 from Pseudomonas aeruginosa
Q9I234: arylformamidase (EC 3.5.1.9) from Pseudomonas aeruginosa

58% id,
98% cov

Q63WP3: arylformamidase (EC 3.5.1.9) from Burkholderia pseudomallei

59% id,
96% cov

More...

Ac3H11_1663: putative esterase
is similar to:
PaperBLAST

acmF / D6R242: arylformamidase (EC 3.5.1.9) from Streptomyces anulatus

35% id,
88% cov

A0A287B5F1: arylformamidase (EC 3.5.1.9) from Sus scrofa

33% id,
92% cov

KFA_MOUSE / Q8K4H1: Kynurenine formamidase; KFA; KFase; Arylformamidase; N-formylkynurenine formamidase; FKF; EC 3.5.1.9 from Mus musculus
Afmid / Q8K4H1: arylformamidase (EC 3.5.1.9) from Mus musculus
Q8K4H1: arylformamidase (EC 3.5.1.9) from Mus musculus

33% id,
88% cov

More...

Ac3H11_4388: Esterase/lipase-like
is similar to:
PaperBLAST

acmF / D6R242: arylformamidase (EC 3.5.1.9) from Streptomyces anulatus

26% id,
74% cov

sibK / C0LTM5: aryl formamidase (EC 3.5.1.9) from Streptosporangium sibiricum

27% id,
50% cov

Ac3H11_2532: FIG00581870: hypothetical protein
is similar to:
PaperBLAST

KFA_MOUSE / Q8K4H1: Kynurenine formamidase; KFA; KFase; Arylformamidase; N-formylkynurenine formamidase; FKF; EC 3.5.1.9 from Mus musculus
Afmid / Q8K4H1: arylformamidase (EC 3.5.1.9) from Mus musculus
Q8K4H1: arylformamidase (EC 3.5.1.9) from Mus musculus

27% id,
49% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

258818-259732 (frame -3) on scaffold5/19
is similar to:
PaperBLAST

M0RC77: arylformamidase (EC 3.5.1.9) from Rattus norvegicus
Also see hits to annotated proteins above

31% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory