Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 15 curated entries in PaperBLAST's database that match '4.1.1.43' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_3309: Pyruvate decarboxylase (EC 4.1.1.1); Alpha-keto-acid decarboxylase (EC 4.1.1.-)
is similar to:
PaperBLAST

pdc / Q5NYJ8: phenylpyruvate decarboxylase (EC 4.1.1.43) from Aromatoleum aromaticum

59% id,
100% cov

ipdC / P51852: phenylpyruvate decarboxylase (EC 4.1.1.43) from Azospirillum brasilense

57% id,
99% cov

PDC5_YEAST / P16467: Pyruvate decarboxylase isozyme 2; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74 from Saccharomyces cerevisiae
PDC5 / P16467: pyruvate decarboxylase 2 monomer (EC 4.1.1.1; EC 4.1.1.43; EC 4.1.1.74; EC 4.1.1.72) from Saccharomyces cerevisiae

26% id,
99% cov

More...

Ac3H11_525: Acetolactate synthase large subunit (EC 2.2.1.6)
is similar to:
PaperBLAST

PDC1_YEAST / P06169: Pyruvate decarboxylase isozyme 1; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74 from Saccharomyces cerevisiae
PDC1 / P06169: pyruvate decarboxylase (EC 4.1.1.1; EC 4.1.1.80; EC 4.1.1.43; EC 4.1.1.74; EC 4.1.1.72) from Saccharomyces cerevisiae

23% id,
89% cov

PDC6_YEAST / P26263: Pyruvate decarboxylase isozyme 3; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74 from Saccharomyces cerevisiae
PDC6 / P26263: pyruvate decarboxylase 3 monomer (EC 4.1.1.1; EC 4.1.1.80; EC 4.1.1.43; EC 4.1.1.74; EC 4.1.1.72) from Saccharomyces cerevisiae

22% id,
89% cov

ipdC / P51852: phenylpyruvate decarboxylase (EC 4.1.1.43) from Azospirillum brasilense

26% id,
59% cov

More...

Ac3H11_1601: Acetolactate synthase large subunit (EC 2.2.1.6)
is similar to:
PaperBLAST

PDC6_YEAST / P26263: Pyruvate decarboxylase isozyme 3; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74 from Saccharomyces cerevisiae
PDC6 / P26263: pyruvate decarboxylase 3 monomer (EC 4.1.1.1; EC 4.1.1.80; EC 4.1.1.43; EC 4.1.1.74; EC 4.1.1.72) from Saccharomyces cerevisiae

22% id,
89% cov

ipdC / P51852: phenylpyruvate decarboxylase (EC 4.1.1.43) from Azospirillum brasilense

29% id,
25% cov

Ac3H11_1086: Glyoxylate carboligase (EC 4.1.1.47)
is similar to:
PaperBLAST

PDC1_YEAST / P06169: Pyruvate decarboxylase isozyme 1; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74 from Saccharomyces cerevisiae
PDC1 / P06169: pyruvate decarboxylase (EC 4.1.1.1; EC 4.1.1.80; EC 4.1.1.43; EC 4.1.1.74; EC 4.1.1.72) from Saccharomyces cerevisiae

21% id,
88% cov

PDC6_YEAST / P26263: Pyruvate decarboxylase isozyme 3; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74 from Saccharomyces cerevisiae
PDC6 / P26263: pyruvate decarboxylase 3 monomer (EC 4.1.1.1; EC 4.1.1.80; EC 4.1.1.43; EC 4.1.1.74; EC 4.1.1.72) from Saccharomyces cerevisiae

21% id,
59% cov

Ac3H11_3180: Benzoylformate decarboxylase (EC 4.1.1.7)
is similar to:
PaperBLAST

Q2UKV4: phenylpyruvate decarboxylase (EC 4.1.1.43) from Aspergillus oryzae

23% id,
55% cov

ipdC / P51852: phenylpyruvate decarboxylase (EC 4.1.1.43) from Azospirillum brasilense

26% id,
22% cov

Ac3H11_3566: 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)
is similar to:
PaperBLAST

ppdcα / A0A222AKA3: phenylpyruvate decarboxylase α subunit (EC 4.1.1.43) from Streptomyces virginiae
A0A222AKA3: phenylpyruvate decarboxylase (EC 4.1.1.43) from Streptomyces virginiae

32% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory