Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 2 curated entries in PaperBLAST's database that match '4.1.1.75' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_1601: Acetolactate synthase large subunit (EC 2.2.1.6)
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
aruI / Q9HUI8: 2-ketoarginine decarboxylase (EC 4.1.1.75) from Pseudomonas aeruginosa

30% id,
91% cov

Ac3H11_1086: Glyoxylate carboligase (EC 4.1.1.47)
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
aruI / Q9HUI8: 2-ketoarginine decarboxylase (EC 4.1.1.75) from Pseudomonas aeruginosa

30% id,
85% cov

Ac3H11_3180: Benzoylformate decarboxylase (EC 4.1.1.7)
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
aruI / Q9HUI8: 2-ketoarginine decarboxylase (EC 4.1.1.75) from Pseudomonas aeruginosa

26% id,
95% cov

Ac3H11_525: Acetolactate synthase large subunit (EC 2.2.1.6)
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
aruI / Q9HUI8: 2-ketoarginine decarboxylase (EC 4.1.1.75) from Pseudomonas aeruginosa

30% id,
62% cov

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
aruI / Q9HUI8: 2-ketoarginine decarboxylase (EC 4.1.1.75) from Pseudomonas aeruginosa

29% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory