Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 21 curated entries in PaperBLAST's database that match '4.1.3.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_1482: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4)
is similar to:
PaperBLAST

Q47098: 4-hydroxy-2-oxoheptanedioate aldolase (EC 4.1.2.52); 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli

61% id,
99% cov

BPHF_RHOJR / O05151: 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.39 from Rhodococcus jostii

56% id,
98% cov

Ac3H11_3372: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4)
is similar to:
PaperBLAST

BPHF_RHOJR / O05151: 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.39 from Rhodococcus jostii

59% id,
98% cov

Q47098: 4-hydroxy-2-oxoheptanedioate aldolase (EC 4.1.2.52); 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli

58% id,
99% cov

Ac3H11_530: 2-isopropylmalate synthase (EC 2.3.3.13)
is similar to:
PaperBLAST

P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida

25% id,
95% cov

HOA_PSEUF / P51016: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Pseudomonas sp.
dmpG / P51016: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas sp.
P51016: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas sp.

29% id,
73% cov

Ac3H11_370: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
is similar to:
PaperBLAST

HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans
bphI / GB|ABE37049.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Burkholderia xenovorans
P51015: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39); 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Paraburkholderia xenovorans

26% id,
76% cov

P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida

24% id,
76% cov

Ac3H11_3018: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
is similar to:
PaperBLAST

P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida

35% id,
34% cov

Ac3H11_5000: 2-isopropylmalate synthase (EC 2.3.3.13)
is similar to:
PaperBLAST

P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida

27% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory