Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 3 curated entries in PaperBLAST's database that match '4.2.1.117' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_2323: 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
is similar to:
PaperBLAST

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis
acnD / Q8EJW3: 2-methylcitrate dehydratase (EC 4.2.1.117) from Shewanella oneidensis
Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) from Shewanella oneidensis

78% id,
99% cov

Ac3H11_1140: Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
is similar to:
PaperBLAST

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis
acnD / Q8EJW3: 2-methylcitrate dehydratase (EC 4.2.1.117) from Shewanella oneidensis
Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) from Shewanella oneidensis

45% id,
57% cov

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis
acnD / Q8EJW3: 2-methylcitrate dehydratase (EC 4.2.1.117) from Shewanella oneidensis
Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) from Shewanella oneidensis

41% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory