Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 14 curated entries in PaperBLAST's database that match '4.2.1.25' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_604: L-arabonate dehydratase (EC 4.2.1.25)
is similar to:
PaperBLAST

ARADA_AZOBR / Q1JUQ1: L-arabonate dehydratase; L-arabinonate dehydratase; EC 4.2.1.25 from Azospirillum brasilense
Q1JUQ1: L-Arabinonate dehydratase (EC 4.2.1.25) from Azospirillum brasilense

85% id,
100% cov

HSERO_RS05205: L-arabonate dehydratase (EC 4.2.1.25) from Herbaspirillum seropedicae

84% id,
99% cov

AO356_24585: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

83% id,
100% cov

More...

Ac3H11_3523: Xylonate dehydratase (EC 4.2.1.82)
is similar to:
PaperBLAST

PS417_11000: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas simiae

43% id,
100% cov

SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti

44% id,
97% cov

AO356_24585: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

42% id,
100% cov

More...

Ac3H11_954: Dihydroxy-acid dehydratase (EC 4.2.1.9)
is similar to:
PaperBLAST

Pf6N2E2_609: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

36% id,
97% cov

SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti

37% id,
94% cov

HSERO_RS05205: L-arabonate dehydratase (EC 4.2.1.25) from Herbaspirillum seropedicae

36% id,
97% cov

More...

Ac3H11_600: Galactonate dehydratase (EC 4.2.1.6)
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

34% id,
97% cov

xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii

32% id,
90% cov

Ac3H11_955: Dihydroxy-acid dehydratase (EC 4.2.1.9)
is similar to:
PaperBLAST

BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans

29% id,
93% cov

SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti

31% id,
66% cov

HSERO_RS05205: L-arabonate dehydratase (EC 4.2.1.25) from Herbaspirillum seropedicae

33% id,
61% cov

More...

Ac3H11_2082: Phosphogluconate dehydratase (EC 4.2.1.12)
is similar to:
PaperBLAST

ARADA_AZOBR / Q1JUQ1: L-arabonate dehydratase; L-arabinonate dehydratase; EC 4.2.1.25 from Azospirillum brasilense
Q1JUQ1: L-Arabinonate dehydratase (EC 4.2.1.25) from Azospirillum brasilense

31% id,
86% cov

Pf6N2E2_609: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

30% id,
90% cov

BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans

30% id,
89% cov

More...

Ac3H11_338: Glucarate dehydratase (EC 4.2.1.40)
is similar to:
PaperBLAST

xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii

26% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory