Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 10 curated entries in PaperBLAST's database that match '4.2.1.80' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_4809: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-)
is similar to:
PaperBLAST

xylJ / P23107: 2-oxopent-4-enoate hydratase subunit (EC 4.2.1.80) from Pseudomonas putida

41% id,
99% cov

MHPD_COMTE / Q9S156: 2-keto-4-pentenoate hydratase; 2-hydroxypentadienoic acid hydratase; EC 4.2.1.80 from Comamonas testosteroni

36% id,
97% cov

AMNF_PSESP / Q9KWS4: 2-oxopent-4-enoate hydratase; 2-keto-4-pentenoate hydratase; EC 4.2.1.80 from Pseudomonas sp.

36% id,
96% cov

More...

Ac3H11_1483: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-)
is similar to:
PaperBLAST

xylJ / P23107: 2-oxopent-4-enoate hydratase subunit (EC 4.2.1.80) from Pseudomonas putida

42% id,
85% cov

MHPD_COMTE / Q9S156: 2-keto-4-pentenoate hydratase; 2-hydroxypentadienoic acid hydratase; EC 4.2.1.80 from Comamonas testosteroni

40% id,
88% cov

cnbE / Q38M38: 2-oxopent-4-enoate hydratase (EC 4.2.1.80) from Comamonas testosteroni

42% id,
82% cov

More...

Ac3H11_2496: 2-keto-4-pentenoate hydratase (EC 4.2.1.80)
is similar to:
PaperBLAST

MHPD_COMTE / Q9S156: 2-keto-4-pentenoate hydratase; 2-hydroxypentadienoic acid hydratase; EC 4.2.1.80 from Comamonas testosteroni

30% id,
96% cov

cmtF / Q51981: 2-oxopent-4-enoate hydratase (EC 4.2.1.80) from Pseudomonas putida

28% id,
89% cov

todG / Q79DA5: 2-oxopent-4-enoate hydratase (EC 4.2.1.80) from Pseudomonas putida

27% id,
90% cov

More...

Ac3H11_1487: 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-)
is similar to:
PaperBLAST

MHPD_COMTE / Q9S156: 2-keto-4-pentenoate hydratase; 2-hydroxypentadienoic acid hydratase; EC 4.2.1.80 from Comamonas testosteroni

27% id,
60% cov

Ac3H11_213: Fumarylacetoacetate hydrolase family protein
is similar to:
PaperBLAST

MHPD_ECOLI / P77608: 2-keto-4-pentenoate hydratase; 2-hydroxypentadienoic acid hydratase; EC 4.2.1.80 from Escherichia coli
MhpS / b0350: 2-hydroxypentadienoate hydratase (EC 4.2.1.80) from Escherichia coli
mhpD / P77608: 2-hydroxypentadienoate hydratase (EC 4.2.1.80) from Escherichia coli
P77608: 2-oxopent-4-enoate hydratase (EC 4.2.1.80) from Escherichia coli

39% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory