Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)
Found 11 curated entries in PaperBLAST's database that match '4.2.1.90' as complete word(s).
These curated entries have 7 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Acidovorax sp. GW101-3H11, or try another query
Ac3H11_3953: D-galactarate dehydratase (EC 4.2.1.42) is similar to: | PaperBLAST |
BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans | 32% id, 65% cov |
Ac3H11_600: Galactonate dehydratase (EC 4.2.1.6) is similar to: | PaperBLAST |
A3LZU6: L-rhamnonate dehydratase (EC 4.2.1.90) from Scheffersomyces stipitis | 27% id, 76% cov |
RHMD_ECOLI / P77215: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Escherichia coli | 28% id, 64% cov |
lra3 / Q1NEI8: L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp. | 28% id, 65% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
177102-178697 (frame -1) on scaffold5/0 is similar to: | PaperBLAST |
BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans | 31% id, 90% cov |
35710-36912 (frame -1) on scaffold5/37 is similar to: | PaperBLAST |
A3LZU6: L-rhamnonate dehydratase (EC 4.2.1.90) from Scheffersomyces stipitis | 26% id, 81% cov |
lra3 / Q1NEI8: L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp. | 28% id, 72% cov |
Lawrence Berkeley National Laboratory