Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 7 curated entries in PaperBLAST's database that match '4.3.1.12'.

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_4531: Ornithine cyclodeaminase (EC 4.3.1.12)
is similar to:
PaperBLAST

OCD_PSEPK / Q88H32: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Pseudomonas putida
Q88H32: ornithine cyclodeaminase (EC 4.3.1.12) from Pseudomonas putida

65% id,
97% cov

OCD_AGRFC / P09773: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium fabrum
arcB / P09773: ornithine cyclodeaminase (EC 4.3.1.12) from Agrobacterium fabrum

59% id,
96% cov

OCD_AGRT4 / Q59701: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium tumefaciens

59% id,
93% cov

More...

Ac3H11_1121: Ornithine cyclodeaminase (EC 4.3.1.12)
is similar to:
PaperBLAST

arcB / J7SH14: ornithine cyclodeaminase subunit (EC 4.3.1.12) from Clostridium sporogenes

25% id,
74% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory