Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 50 curated entries in PaperBLAST's database that match '4.3.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_929: L-serine dehydratase (EC 4.3.1.17)
is similar to:
PaperBLAST

Ac3H11_929: L-serine ammonia-lyase (EC 4.3.1.17) from Acidovorax sp.

100% id,
100% cov

RR42_RS20080: L-serine ammonia-lyase (EC 4.3.1.17) from Cupriavidus basilensis

66% id,
100% cov

Pf6N2E2_5557: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

65% id,
100% cov

More...

Ac3H11_37: Threonine dehydratase, catabolic (EC 4.3.1.19)
is similar to:
PaperBLAST

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe

70% id,
100% cov

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

41% id,
99% cov

SRR_MOUSE / Q9QZX7: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Mus musculus

41% id,
92% cov

More...

Ac3H11_2427: Threonine dehydratase, catabolic (EC 4.3.1.19)
is similar to:
PaperBLAST

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe

57% id,
100% cov

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

42% id,
99% cov

TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli
Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli
tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli

41% id,
95% cov

More...

Ac3H11_4836: Threonine dehydratase (EC 4.3.1.19)
is similar to:
PaperBLAST

TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima

44% id,
100% cov

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens

44% id,
98% cov

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

42% id,
94% cov

More...

Ac3H11_2042: Threonine dehydratase biosynthetic (EC 4.3.1.19)
is similar to:
PaperBLAST

TD2_SOLLC / P25306: Threonine dehydratase 2 biosynthetic, chloroplastic; SlTD2; Threonine deaminase 2; EC 4.3.1.17; EC 4.3.1.19 from Solanum lycopersicum

45% id,
84% cov

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

37% id,
92% cov

TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli
Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli
tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli

37% id,
92% cov

More...

Ac3H11_1352: Threonine dehydratase (EC 4.3.1.19)
is similar to:
PaperBLAST

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

33% id,
99% cov

TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli
Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli
tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli

30% id,
94% cov

SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa

29% id,
95% cov

More...

Ac3H11_1770: Threonine dehydratase (EC 4.3.1.19)
is similar to:
PaperBLAST

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

33% id,
97% cov

SDSL_MOUSE / Q8R238: Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; SDH; EC 4.3.1.17; EC 4.3.1.19 from Mus musculus

32% id,
94% cov

SDSL_HUMAN / Q96GA7: Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; Serine dehydratase 2; SDH 2; EC 4.3.1.19; EC 4.3.1.17 from Homo sapiens
SDSL / Q96GA7: Serine dehydratase-like (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens
Q96GA7: L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens

32% id,
92% cov

More...

Ac3H11_846: 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7)
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

32% id,
95% cov

Ac3H11_1975: Cysteine synthase (EC 2.5.1.47)
is similar to:
PaperBLAST

SRR_MOUSE / Q9QZX7: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Mus musculus

27% id,
89% cov

SRR_RAT / Q76EQ0: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus

26% id,
84% cov

SRR_HUMAN / Q9GZT4: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Homo sapiens

27% id,
82% cov

Ac3H11_1429: Cysteine synthase B (EC 2.5.1.47)
is similar to:
PaperBLAST

SRR_HUMAN / Q9GZT4: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Homo sapiens

23% id,
85% cov

Ac3H11_1534: Tryptophan synthase beta chain (EC 4.2.1.20)
is similar to:
PaperBLAST

TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima

26% id,
55% cov

Ac3H11_644: Cysteine synthase B (EC 2.5.1.47)
is similar to:
PaperBLAST

B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica

33% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory