Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 8 curated entries in PaperBLAST's database that match '4.3.1.9' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_1700: Thioredoxin reductase (EC 1.8.1.9)
is similar to:
PaperBLAST

GLCAL_PSEFL / Q93HX6: Glucosaminate ammonia-lyase; D-glucosaminate dehydratase alpha-subunit; GlcNA-DH alpha subunit; GlcNADH-alpha; EC 4.3.1.9 from Pseudomonas fluorescens
Q93HX6: glucosaminate ammonia-lyase (EC 4.3.1.9) from Pseudomonas fluorescens

72% id,
98% cov

Ac3H11_693: D-serine deaminase (EC 4.3.1.18)
is similar to:
PaperBLAST

AO353_21740: D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas fluorescens

39% id,
97% cov

AO356_00450: D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas fluorescens

40% id,
95% cov

Pf6N2E2_2047: D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas fluorescens

39% id,
95% cov

More...

Ac3H11_232: Alkyl hydroperoxide reductase protein F (EC 1.6.4.-)
is similar to:
PaperBLAST

GLCAL_PSEFL / Q93HX6: Glucosaminate ammonia-lyase; D-glucosaminate dehydratase alpha-subunit; GlcNA-DH alpha subunit; GlcNADH-alpha; EC 4.3.1.9 from Pseudomonas fluorescens
Q93HX6: glucosaminate ammonia-lyase (EC 4.3.1.9) from Pseudomonas fluorescens

33% id,
95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory