Curated BLAST
Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)
Found 13 curated entries in PaperBLAST's database that match '5.1.1.7' as complete word(s).
These curated entries have 8 distinct sequences.
Running ublast with E ≤ 0.01
Found 1 relevant proteins in Acidovorax sp. GW101-3H11, or try another query
Ac3H11_1993: Diaminopimelate epimerase (EC 5.1.1.7)
is similar to: | PaperBLAST |
DAPF_ECOLI / P0A6K1: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Escherichia coli
DapF / b3809: diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli
dapF / P0A6K1: diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli | 52% id,
98% cov |
DAPF_HAEIN / P44859: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Haemophilus influenzae | 50% id,
98% cov |
E4NI20: diaminopimelate epimerase (EC 5.1.1.7) from Kitasatospora setae | 39% id,
94% cov |
DAPF_BACAN / Q81XR2: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Bacillus anthracis | 35% id,
94% cov |
DAPF_ARATH / Q9LFG2: Diaminopimelate epimerase, chloroplastic; DAP epimerase; EC 5.1.1.7 from Arabidopsis thaliana
Q9LFG2: diaminopimelate epimerase (EC 5.1.1.7) from Arabidopsis thaliana | 41% id,
76% cov |
DAPF_CORGL / Q8NP73: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Corynebacterium glutamicum
Q8NP73: diaminopimelate epimerase (EC 5.1.1.7) from Corynebacterium glutamicum | 32% id,
95% cov |
DAPF_MYCTU / P9WP19: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Mycobacterium tuberculosis
P9WP19: diaminopimelate epimerase (EC 5.1.1.7) from Mycobacterium tuberculosis | 39% id,
43% cov |
DAPF_MYCTU / P9WP19: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Mycobacterium tuberculosis
P9WP19: diaminopimelate epimerase (EC 5.1.1.7) from Mycobacterium tuberculosis | 35% id,
46% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins.
These remaining reading frames may be pseudogenes, omissions in the genome annotation,
or N-terminal extensions of annotated proteins.
209149-210036 (frame +1) on scaffold5/16
is similar to: | PaperBLAST |
DAPF_ECOLI / P0A6K1: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Escherichia coli
DapF / b3809: diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli
dapF / P0A6K1: diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli
Also see hits to annotated proteins above | 52% id,
100% cov |
DAPF_HAEIN / P44859: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Haemophilus influenzae
Also see hits to annotated proteins above | 49% id,
100% cov |
DAPF_BACAN / Q81XR2: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Bacillus anthracis
Also see hits to annotated proteins above | 35% id,
97% cov |
DAPF_CORGL / Q8NP73: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Corynebacterium glutamicum
Q8NP73: diaminopimelate epimerase (EC 5.1.1.7) from Corynebacterium glutamicum
Also see hits to annotated proteins above | 32% id,
100% cov |
DAPF_ARATH / Q9LFG2: Diaminopimelate epimerase, chloroplastic; DAP epimerase; EC 5.1.1.7 from Arabidopsis thaliana
Q9LFG2: diaminopimelate epimerase (EC 5.1.1.7) from Arabidopsis thaliana
Also see hits to annotated proteins above | 41% id,
78% cov |
More... |
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory