Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 11 curated entries in PaperBLAST's database that match '5.1.3.29' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_3038: L-fucose mutarotase
is similar to:
PaperBLAST

FUCM_ECOLI / P0AEN8: L-fucose mutarotase; D-ribose pyranase; Fucose 1-epimerase; Type-2 mutarotase; EC 5.1.3.29; EC 5.4.99.62 from Escherichia coli
FucU / b2804: L-fucose mutarotase (EC 5.1.3.29; EC 5.4.99.62) from Escherichia coli
fucU / P0AEN8: L-fucose mutarotase (EC 5.1.3.29; EC 5.4.99.62) from Escherichia coli
P0AEN8: L-fucose mutarotase (EC 5.1.3.29); D-ribose pyranase (EC 5.4.99.62) from Escherichia coli

43% id,
99% cov

FUCM_HUMAN / A2VDF0: Fucose mutarotase; EC 5.1.3.29 from Homo sapiens
A2VDF0: L-fucose mutarotase (EC 5.1.3.29) from Homo sapiens

44% id,
95% cov

FUCM_MOUSE / Q8R2K1: Fucose mutarotase; EC 5.1.3.29 from Mus musculus
Q8R2K1: L-fucose mutarotase (EC 5.1.3.29); D-ribose pyranase (EC 5.4.99.62) from Mus musculus

40% id,
95% cov

Ac3H11_1838: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
is similar to:
PaperBLAST

FUCM_HUMAN / A2VDF0: Fucose mutarotase; EC 5.1.3.29 from Homo sapiens
A2VDF0: L-fucose mutarotase (EC 5.1.3.29) from Homo sapiens

31% id,
90% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory