Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 4 curated entries in PaperBLAST's database that match '5.3.3.7' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_2325: 2-methylaconitate cis-trans isomerase
is similar to:
PaperBLAST

Q8EJW4: aconitate DELTA-isomerase (EC 5.3.3.7) from Shewanella oneidensis

78% id,
99% cov

ADI1 / A0A0U2X0E4: aconitate-Δ-isomerase 1 (EC 5.3.3.7) from Ustilago maydis

32% id,
80% cov

Ac3H11_4370: FIG00786362: hypothetical protein
is similar to:
PaperBLAST

ADI1 / A0A0U2X0E4: aconitate-Δ-isomerase 1 (EC 5.3.3.7) from Ustilago maydis

48% id,
79% cov

Q8EJW4: aconitate DELTA-isomerase (EC 5.3.3.7) from Shewanella oneidensis

32% id,
98% cov

Ac3H11_1182: Hypothetical ABC transport system, periplasmic component
is similar to:
PaperBLAST

AIS_PSESP / A0A0A1H8I4: Aconitate isomerase; AI; EC 5.3.3.7 from Pseudomonas sp.
A0A0A1H8I4: aconitate DELTA-isomerase (EC 5.3.3.7) from Pseudomonas sp.

39% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

19849-20670 (frame +1) on scaffold5/14
is similar to:
PaperBLAST

AIS_PSESP / A0A0A1H8I4: Aconitate isomerase; AI; EC 5.3.3.7 from Pseudomonas sp.
A0A0A1H8I4: aconitate DELTA-isomerase (EC 5.3.3.7) from Pseudomonas sp.
Also see hits to annotated proteins above

39% id,
92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory