Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)
Found 8 curated entries in PaperBLAST's database that match '5.5.1.1' as complete word(s).
These curated entries have 6 distinct sequences.
Running ublast with E ≤ 0.01
Found 1 relevant proteins in Acidovorax sp. GW101-3H11, or try another query
| Ac3H11_600: Galactonate dehydratase (EC 4.2.1.6) is similar to: | PaperBLAST |
catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei | 27% id, 86% cov |
C6YXG6: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei | 26% id, 90% cov |
PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae | 26% id, 88% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 35710-36912 (frame -1) on scaffold5/37 is similar to: | PaperBLAST |
catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei | 27% id, 91% cov |
PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae | 25% id, 93% cov |
salC / Q4KPK2: muconate cycloisomerase I (EC 5.5.1.1; EC 5.5.1.7) from Pseudomonas reinekei | 25% id, 94% cov |
Lawrence Berkeley National Laboratory