Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidovorax sp. GW101-3H11 (acidovorax_3H11)

Found 5 curated entries in PaperBLAST's database that match 'arginosuccinate lyase' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Acidovorax sp. GW101-3H11, or try another query

Ac3H11_1632: Argininosuccinate lyase (EC 4.3.2.1)
is similar to:
PaperBLAST

AN2914: arginosuccinate lyase (Eurofung) from Emericella nidulans

40% id,
93% cov

Echvi_3852: arginosuccinate lyase (EC 4.3.2.1) from Echinicola vietnamensis

37% id,
83% cov

BT3733: arginosuccinate lyase (EC 4.3.2.1) from Bacteroides thetaiotaomicron

33% id,
86% cov

More...

Ac3H11_3293: Argininosuccinate lyase (EC 4.3.2.1)
is similar to:
PaperBLAST

AN2914: arginosuccinate lyase (Eurofung) from Emericella nidulans

28% id,
77% cov

BT3733: arginosuccinate lyase (EC 4.3.2.1) from Bacteroides thetaiotaomicron

28% id,
66% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory