Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 76 curated entries in PaperBLAST's database that match '1.1.1.27' as complete word(s).

These curated entries have 63 distinct sequences.

Running ublast with E ≤ 0.01

Found 17 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS01310: lactate dehydrogenase
is similar to:
PaperBLAST

LDH_THET8 / Q5SJA1: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermus thermophilus

65% id,
99% cov

LDH_THECA / P06150: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermus caldophilus

64% id,
99% cov

LDH_THEAQ / P13715: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermus aquaticus

62% id,
99% cov

More...

AZOBR_RS14060: malate dehydrogenase
is similar to:
PaperBLAST

Q8I8U5: L-lactate dehydrogenase (EC 1.1.1.27) from Eimeria acervulina

55% id,
98% cov

Q9GT92: L-lactate dehydrogenase (EC 1.1.1.27) from Cryptosporidium parvum

50% id,
100% cov

Q27797: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii

51% id,
95% cov

More...

AZOBR_RS25110: (Fe-S)-binding protein
is similar to:
PaperBLAST

Q5F883: L-lactate dehydrogenase (subunit 1/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

53% id,
96% cov

lutB / O07021: component of an iron-sulfur oxidase linked to L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

40% id,
93% cov

AZOBR_RS25115: Fe-S oxidoreductase
is similar to:
PaperBLAST

Q5F885: L-lactate dehydrogenase (subunit 3/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

54% id,
94% cov

lutA / O07020: iron-sulfur oxidase subunit used in L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

45% id,
100% cov

AZOBR_RS32240: acetaldehyde dehydrogenase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

49% id,
98% cov

AZOBR_RS01615: Fe-S oxidoreductase
is similar to:
PaperBLAST

lutA / O07020: iron-sulfur oxidase subunit used in L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

48% id,
98% cov

Q5F885: L-lactate dehydrogenase (subunit 3/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

34% id,
92% cov

AZOBR_RS01620: putative oxidoreductase subunit with NAD(P)-binding domain and ferridoxin-like domain
is similar to:
PaperBLAST

Q5F883: L-lactate dehydrogenase (subunit 1/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

40% id,
98% cov

lutB / O07021: component of an iron-sulfur oxidase linked to L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

39% id,
99% cov

lutC / O32259: component of an iron-sulfur oxidase for L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

29% id,
37% cov

AZOBR_RS25105: hypothetical protein
is similar to:
PaperBLAST

Q5F884: L-lactate dehydrogenase (subunit 2/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

39% id,
94% cov

lutC / O32259: component of an iron-sulfur oxidase for L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

27% id,
76% cov

AZOBR_RS19085: glycolate oxidase
is similar to:
PaperBLAST

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

36% id,
94% cov

AZOBR_RS05735: 2-hydroxy-acid oxidase
is similar to:
PaperBLAST

lutA / O07020: iron-sulfur oxidase subunit used in L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

28% id,
99% cov

Q5F885: L-lactate dehydrogenase (subunit 3/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

24% id,
80% cov

AZOBR_RS32475: aldehyde Dehydrogenase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

34% id,
52% cov

AZOBR_RS27055: L-lactate dehydrogenase
is similar to:
PaperBLAST

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

37% id,
47% cov

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

30% id,
48% cov

AZOBR_RS01625: hypothetical protein
is similar to:
PaperBLAST

Q5F884: L-lactate dehydrogenase (subunit 2/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

32% id,
51% cov

lutC / O32259: component of an iron-sulfur oxidase for L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

32% id,
51% cov

AZOBR_RS27605: alcohol dehydrogenase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

31% id,
46% cov

AZOBR_RS28580: alcohol dehydrogenase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

29% id,
47% cov

AZOBR_RS06065: alcohol dehydrogenase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

26% id,
44% cov

AZOBR_RS20490: cyclohexadienyl dehydrogenase
is similar to:
PaperBLAST

LDH2_BIFL2 / E8ME30: L-lactate dehydrogenase 2; L-LDH 2; FBP-dependent LDH; EC 1.1.1.27 from Bifidobacterium longum
ldh2 / E8ME30: L-lactate dehydrogenase subunit (EC 1.1.1.27) from Bifidobacterium longum

24% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 16 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

690504-691490 (frame -1) on NC_016618.1
is similar to:
PaperBLAST

Q5F885: L-lactate dehydrogenase (subunit 3/3) (EC 1.1.1.27) from Neisseria gonorrhoeae
Also see hits to annotated proteins above

52% id,
97% cov

601025-603847 (frame -1) on NC_016596.1
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
Also see hits to annotated proteins above

48% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory