Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 9 curated entries in PaperBLAST's database that match '1.1.1.343' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS15725: 6-phosphogluconate dehydrogenase
is similar to:
PaperBLAST

6PGDH_BACSU / P12013: 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating; EC 1.1.1.343 from Bacillus subtilis
P12013: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Bacillus subtilis

46% id,
99% cov

Q9WYR9: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343); phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Thermotoga maritima

43% id,
99% cov

A0A1J5NX54: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343); phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Moorella thermoacetica

39% id,
99% cov

More...

AZOBR_RS26815: 3-hydroxyisobutyrate dehydrogenase
is similar to:
PaperBLAST

6PGD_HALVD / D4GST8: 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating; 6PGDH; EC 1.1.1.343 from Haloferax volcanii
D4GST8: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Haloferax volcanii

31% id,
73% cov

AZOBR_RS22360: 3-hydroxyisobutyrate dehydrogenase
is similar to:
PaperBLAST

6PGD_HALVD / D4GST8: 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating; 6PGDH; EC 1.1.1.343 from Haloferax volcanii
D4GST8: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Haloferax volcanii

31% id,
69% cov

AZOBR_RS20875: oxidoreductase
is similar to:
PaperBLAST

6PGDH_BACSU / P12013: 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating; EC 1.1.1.343 from Bacillus subtilis
P12013: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Bacillus subtilis

24% id,
35% cov

AZOBR_RS14450: potassium transporter TrkA
is similar to:
PaperBLAST

6PGDH_BACSU / P12013: 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating; EC 1.1.1.343 from Bacillus subtilis
P12013: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Bacillus subtilis

32% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory