Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.58' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS16160: altronate oxidoreductase
is similar to:
PaperBLAST

UxaB / b1521: tagaturonate reductase (EC 1.1.1.58) from Escherichia coli
uxaB / P0A6L7: tagaturonate reductase (EC 1.1.1.58) from Escherichia coli

45% id,
98% cov

A9QSF6: tagaturonate reductase (EC 1.1.1.58) from Lactococcus lactis

39% id,
93% cov

CA265_RS19880: Altronate oxidoreductase (EC 1.1.1.58) from Pedobacter sp.

33% id,
88% cov

AZOBR_RS31275: altronate oxidoreductase
is similar to:
PaperBLAST

UxaB / b1521: tagaturonate reductase (EC 1.1.1.58) from Escherichia coli
uxaB / P0A6L7: tagaturonate reductase (EC 1.1.1.58) from Escherichia coli

42% id,
98% cov

A9QSF6: tagaturonate reductase (EC 1.1.1.58) from Lactococcus lactis

41% id,
94% cov

CA265_RS19880: Altronate oxidoreductase (EC 1.1.1.58) from Pedobacter sp.

34% id,
99% cov

AZOBR_RS31375: dioxygenase
is similar to:
PaperBLAST

A9QSF6: tagaturonate reductase (EC 1.1.1.58) from Lactococcus lactis

30% id,
87% cov

UxaB / b1521: tagaturonate reductase (EC 1.1.1.58) from Escherichia coli
uxaB / P0A6L7: tagaturonate reductase (EC 1.1.1.58) from Escherichia coli

26% id,
98% cov

CA265_RS19880: Altronate oxidoreductase (EC 1.1.1.58) from Pedobacter sp.

26% id,
95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory