Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 17 curated entries in PaperBLAST's database that match '1.1.2.3' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS27055: L-lactate dehydrogenase
is similar to:
PaperBLAST

PS417_19130: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas simiae

37% id,
97% cov

Q9I197: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

38% id,
96% cov

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

37% id,
97% cov

More...

AZOBR_RS19085: glycolate oxidase
is similar to:
PaperBLAST

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

35% id,
97% cov

PS417_19130: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas simiae

32% id,
99% cov

lldD: L-lactate dehydrogenase [cytochrome]; EC 1.1.2.3 from Escherichia coli

33% id,
89% cov

More...

AZOBR_RS01620: putative oxidoreductase subunit with NAD(P)-binding domain and ferridoxin-like domain
is similar to:
PaperBLAST

lldG / Q8EGS5: L-lactate dehydrogenase iron-sulfur cluster-binding protein LldF (EC 1.1.2.3) from Shewanella oneidensis

37% id,
91% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

38% id,
60% cov

DVU_3032 / Q726S4: quinone-dependent L-lactate dehydrogenase small subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

32% id,
56% cov

AZOBR_RS25115: Fe-S oxidoreductase
is similar to:
PaperBLAST

lldE / Q8EGS4: L-lactate dehydrogenase LldE subunit (EC 1.1.2.3) from Shewanella oneidensis

34% id,
98% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

35% id,
35% cov

AZOBR_RS01615: Fe-S oxidoreductase
is similar to:
PaperBLAST

lldE / Q8EGS4: L-lactate dehydrogenase LldE subunit (EC 1.1.2.3) from Shewanella oneidensis

33% id,
98% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

36% id,
34% cov

AZOBR_RS25110: (Fe-S)-binding protein
is similar to:
PaperBLAST

lldG / Q8EGS5: L-lactate dehydrogenase iron-sulfur cluster-binding protein LldF (EC 1.1.2.3) from Shewanella oneidensis

40% id,
77% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

38% id,
66% cov

DVU_3032 / Q726S4: quinone-dependent L-lactate dehydrogenase small subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

27% id,
72% cov

AZOBR_RS01625: hypothetical protein
is similar to:
PaperBLAST

lldF / Q8EGS6: L-lactate dehydrogenase LldF subunit (EC 1.1.2.3) from Shewanella oneidensis

29% id,
92% cov

DVU_3032 / Q726S4: quinone-dependent L-lactate dehydrogenase small subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

37% id,
57% cov

AZOBR_RS25105: hypothetical protein
is similar to:
PaperBLAST

DVU_3032 / Q726S4: quinone-dependent L-lactate dehydrogenase small subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

41% id,
49% cov

lldF / Q8EGS6: L-lactate dehydrogenase LldF subunit (EC 1.1.2.3) from Shewanella oneidensis

56% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory