Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 9 curated entries in PaperBLAST's database that match '1.1.2.3' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS27055: L-lactate dehydrogenase
is similar to:
PaperBLAST

PS417_19130: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas simiae

37% id,
97% cov

SM_b20850: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Sinorhizobium meliloti

36% id,
98% cov

Ac3H11_1623: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Acidovorax sp.

36% id,
95% cov

More...

AZOBR_RS19085: glycolate oxidase
is similar to:
PaperBLAST

PS417_19130: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas simiae

32% id,
99% cov

lldD: L-lactate dehydrogenase [cytochrome]; EC 1.1.2.3 from Escherichia coli

33% id,
89% cov

CYB2_TALSN / B8MKR3: L-lactate dehydrogenase (cytochrome); EC 1.1.2.3 from Talaromyces stipitatus

34% id,
75% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory