Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 7 curated entries in PaperBLAST's database that match '1.1.3.2' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS19085: glycolate oxidase
is similar to:
PaperBLAST

Q8Z0C8: L-lactate oxidase (EC 1.1.3.2) from Nostoc sp.

47% id,
99% cov

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

41% id,
89% cov

lctO / D4YFM2: lactate oxidase monomer (EC 1.1.3.2) from Aerococcus viridans
D4YFM2: L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

36% id,
94% cov

More...

AZOBR_RS27055: L-lactate dehydrogenase
is similar to:
PaperBLAST

lctO / D4YFM2: lactate oxidase monomer (EC 1.1.3.2) from Aerococcus viridans
D4YFM2: L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

38% id,
47% cov

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

37% id,
47% cov

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

37% id,
46% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory