Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 13 curated entries in PaperBLAST's database that match '1.1.99.39' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS27050: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

39% id,
98% cov

D2HDH_PSEU5 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Pseudomonas stutzeri

35% id,
100% cov

SMc04384: (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Sinorhizobium meliloti

36% id,
97% cov

More...

AZOBR_RS05770: 2-hydroxyacid dehydrogenase
is similar to:
PaperBLAST

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

40% id,
94% cov

SMc04384: (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Sinorhizobium meliloti

37% id,
97% cov

D2HDH_PSEU5 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Pseudomonas stutzeri

35% id,
98% cov

More...

AZOBR_RS29745: 2-hydroxyacid dehydrogenase
is similar to:
PaperBLAST

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

40% id,
94% cov

D2HDH_PSEU5 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Pseudomonas stutzeri

36% id,
99% cov

SMc04384: (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Sinorhizobium meliloti

34% id,
97% cov

More...

AZOBR_RS12240: 2-hydroxy-acid oxidase
is similar to:
PaperBLAST

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

30% id,
97% cov

D2HDH_PSEU5 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Pseudomonas stutzeri

29% id,
99% cov

D2HDH_HUMAN / Q8N465: D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens
D2HGDH / Q8N465: D-2-hydroxyglutarate dehydrogenase, mitochondrial (EC 1.1.99.39) from Homo sapiens
Q8N465: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Homo sapiens

30% id,
79% cov

More...

AZOBR_RS05725: FAD-binding protein
is similar to:
PaperBLAST

D2HDH_PSEU5 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Pseudomonas stutzeri

29% id,
98% cov

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

28% id,
96% cov

D2HDH_HUMAN / Q8N465: D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens
D2HGDH / Q8N465: D-2-hydroxyglutarate dehydrogenase, mitochondrial (EC 1.1.99.39) from Homo sapiens
Q8N465: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Homo sapiens

31% id,
88% cov

More...

AZOBR_RS25120: 4Fe-4S ferredoxin
is similar to:
PaperBLAST

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

28% id,
61% cov

D2HDH_PSEU5 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Pseudomonas stutzeri

27% id,
61% cov

D2HDH_HUMAN / Q8N465: D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens
D2HGDH / Q8N465: D-2-hydroxyglutarate dehydrogenase, mitochondrial (EC 1.1.99.39) from Homo sapiens
Q8N465: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Homo sapiens

26% id,
61% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory