Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 22 curated entries in PaperBLAST's database that match '1.13.12.2'.

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS13145: hypothetical protein
is similar to:
PaperBLAST

novR / Q9L9F0: 3-dimethylallyl-4-hydroxyphenylpyruvate oxygenase (EC 1.13.12.23; EC 1.13.11.83) from Streptomyces niveus

46% id,
91% cov

CLOR_STRRC / Q8GHB1: 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase; Bifunctional non-heme iron oxygenase; Clorobiocin biosynthesis protein CloR; EC 1.13.11.83; EC 1.13.12.23 from Streptomyces roseochromogenus
Q8GHB1: 4-hydroxy-3-prenylphenylpyruvate oxygenase (EC 1.13.11.83); 4-hydroxy-3-prenylbenzoate synthase (EC 1.13.12.23) from Streptomyces roseochromogenes

47% id,
88% cov

AZOBR_RS32010: antibiotic biosynthesis monooxygenase
is similar to:
PaperBLAST

TCMH_STRGA / P39889: Tetracenomycin-F1 monooxygenase; Tetracenomycin polyketide synthesis hydroxylase TcmH; EC 1.13.12.21 from Streptomyces glaucescens
tcmH / P39889: tetracenomycin F1 monooxygenase (EC 1.13.12.21) from Streptomyces glaucescens

47% id,
72% cov

AZOBR_RS18450: aldolase
is similar to:
PaperBLAST

novR / Q9L9F0: 3-dimethylallyl-4-hydroxyphenylpyruvate oxygenase (EC 1.13.12.23; EC 1.13.11.83) from Streptomyces niveus

33% id,
79% cov

CLOR_STRRC / Q8GHB1: 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase; Bifunctional non-heme iron oxygenase; Clorobiocin biosynthesis protein CloR; EC 1.13.11.83; EC 1.13.12.23 from Streptomyces roseochromogenus
Q8GHB1: 4-hydroxy-3-prenylphenylpyruvate oxygenase (EC 1.13.11.83); 4-hydroxy-3-prenylbenzoate synthase (EC 1.13.12.23) from Streptomyces roseochromogenes

33% id,
77% cov

AZOBR_RS05280: fuculose phosphate aldolase
is similar to:
PaperBLAST

CLOR_STRRC / Q8GHB1: 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase; Bifunctional non-heme iron oxygenase; Clorobiocin biosynthesis protein CloR; EC 1.13.11.83; EC 1.13.12.23 from Streptomyces roseochromogenus
Q8GHB1: 4-hydroxy-3-prenylphenylpyruvate oxygenase (EC 1.13.11.83); 4-hydroxy-3-prenylbenzoate synthase (EC 1.13.12.23) from Streptomyces roseochromogenes

27% id,
61% cov

novR / Q9L9F0: 3-dimethylallyl-4-hydroxyphenylpyruvate oxygenase (EC 1.13.12.23; EC 1.13.11.83) from Streptomyces niveus

25% id,
63% cov

AZOBR_RS15410: phytoene dehydrogenase
is similar to:
PaperBLAST

AO353_07420: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

29% id,
23% cov

Q88QV1: lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas putida

31% id,
19% cov

W6JQJ6: lysine 2-monooxygenase (EC 1.13.12.2); L-amino-acid oxidase (EC 1.4.3.2) from Pseudomonas sp.

34% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory