Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 108 curated entries in PaperBLAST's database that match '1.4.1.2'.

These curated entries have 87 distinct sequences.

Running ublast with E ≤ 0.01

Found 19 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS00190: NAD-glutamate dehydrogenase
is similar to:		 PaperBLAST

AZOBR_RS00190: L-glutamate dehydrogenase (NAD+) (EC 1.4.1.2) from Azospirillum brasilense

 100% id,
100% cov

Q8CJY0: glutamate dehydrogenase (EC 1.4.1.2) from Streptomyces coelicolor

 51% id,
96% cov

DHE2_HALED / E1V4J5: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Halomonas elongata

 48% id,
99% cov

More...

AZOBR_RS03960: dihydrolipoamide dehydrogenase
is similar to:		 PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

 61% id,
92% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

 61% id,
91% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

 57% id,
92% cov

More...

AZOBR_RS10460: glycine dehydrogenase
is similar to:		 PaperBLAST

B0F465: glycine cleavage system (subunit 4/5) (EC 1.4.1.27) from Paratrimastix pyriformis

 58% id,
97% cov

Q91W43: glycine cleavage system (EC 1.4.1.27) from Mus musculus

 38% id,
41% cov

P15505: glycine cleavage system (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Gallus gallus

 37% id,
41% cov

More...

AZOBR_RS31975: amino acid dehydrogenase
is similar to:		 PaperBLAST

VDH_STRCO / Q06539: Valine dehydrogenase; ValDH; EC 1.4.1.23 from Streptomyces coelicolor
vdh / Q06539: valine dehydrogenase monomer (EC 1.4.1.23) from Streptomyces coelicolor

 52% id,
95% cov

VDH_STRA4 / O69056: Valine dehydrogenase; ValDH; EC 1.4.1.23 from Streptomyces albus

 51% id,
95% cov

DHPH_BACBA / Q59224: Phenylalanine dehydrogenase; PheDH; EC 1.4.1.20 from Bacillus badius
Q59224: phenylalanine dehydrogenase (EC 1.4.1.20) from Bacillus badius

 48% id,
92% cov

More...

AZOBR_RS10465: glycine cleavage system protein H
is similar to:		 PaperBLAST

P0A6T9: glycine cleavage system (subunit 2/3) (EC 1.4.1.27) from Escherichia coli

 51% id,
95% cov

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

 44% id,
92% cov

GCSH / A8HYD5: glycine cleavage system H protein (EC 1.4.1.27) from Chlamydomonas reinhardtii

 57% id,
71% cov

More...

AZOBR_RS10470: aminomethyltransferase
is similar to:		 PaperBLAST

P28337: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Gallus gallus

 49% id,
96% cov

P48728: glycine cleavage system (subunit 2/4) (EC 1.4.1.27) from Homo sapiens

 48% id,
92% cov

O65396: glycine cleavage system (subunit 1/5) (EC 1.4.1.27) from Arabidopsis thaliana

 46% id,
92% cov

More...

AZOBR_RS22625: glutamate dehydrogenase
is similar to:		 PaperBLAST

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

 46% id,
99% cov

DHE2_BACSU / P39633: Catabolic NAD-specific glutamate dehydrogenase RocG; NAD-GDH; Glutamate dehydrogenase; GlutDH; Trigger enzyme RocG; EC 1.4.1.2 from Bacillus subtilis

 47% id,
94% cov

GUDB_BACSU / P50735: Cryptic catabolic NAD-specific glutamate dehydrogenase GudB; NAD-GDH; EC 1.4.1.2 from Bacillus subtilis

 45% id,
96% cov

More...

AZOBR_RS14390: dihydrolipoamide dehydrogenase
is similar to:		 PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

 39% id,
93% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

 40% id,
92% cov

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

 37% id,
99% cov

More...

AZOBR_RS09745: glutathione reductase
is similar to:		 PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

 31% id,
97% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

 28% id,
89% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

 28% id,
89% cov

More...

AZOBR_RS03120: ornithine cyclodeaminase
is similar to:		 PaperBLAST

DAUB_PSEAE / Q9HXE4: NAD(P)H-dependent anabolic L-arginine dehydrogenase DauB; EC 1.4.1.25 from Pseudomonas aeruginosa
dauB / Q9HXE4: anabolic L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa
Q9HXE4: L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa

 28% id,
95% cov

AZOBR_RS10455: glycine dehydrogenase
is similar to:		 PaperBLAST

P33195: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Escherichia coli

 42% id,
42% cov

Q94B78: glycine cleavage system (subunit 4/5) (EC 1.4.1.27) from Arabidopsis thaliana

 39% id,
42% cov

P26969: glycine cleavage system (subunit 3/4) (EC 1.4.1.27) from Pisum sativum

 40% id,
40% cov

More...

AZOBR_RS20515: alkyl hydroperoxide reductase subunit F
is similar to:		 PaperBLAST

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

 27% id,
63% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

 27% id,
62% cov

AZOBR_RS28130: pyridine nucleotide-disulfide oxidoreductase
is similar to:		 PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

 30% id,
47% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

 29% id,
46% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

 25% id,
46% cov

AZOBR_RS19045: S-adenosyl-L-homocysteine hydrolase
is similar to:		 PaperBLAST

DHPH_CALTT / F5L9G2: Phenylalanine dehydrogenase; PheDH; EC 1.4.1.20 from Caldalkalibacillus thermarum

 33% id,
34% cov

AZOBR_RS29225: 3-hydroxybutyryl-CoA dehydrogenase
is similar to:		 PaperBLAST

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

 25% id,
34% cov

AZOBR_RS16920: 3-hydroxybutyryl-CoA dehydrogenase
is similar to:		 PaperBLAST

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

 25% id,
34% cov

AZOBR_RS00565: ferredoxin--NADP reductase
is similar to:		 PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

 31% id,
16% cov

AZOBR_RS08870: FAD-dependent oxidoreductase
is similar to:		 PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

 50% id,
8% cov

AZOBR_RS15365: single-stranded DNA-binding protein
is similar to:		 PaperBLAST

Q91W43: glycine cleavage system (EC 1.4.1.27) from Mus musculus

 42% id,
6% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 21 reading frames. Except for 6 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

834390-836000 (frame +3) on NC_016617.1
is similar to:		 PaperBLAST

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana
Also see hits to annotated proteins above

 59% id,
96% cov

2197950-2199140 (frame -3) on NC_016617.1
is similar to:		 PaperBLAST

P28337: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Gallus gallus
Also see hits to annotated proteins above

 48% id,
98% cov

P48728: glycine cleavage system (subunit 2/4) (EC 1.4.1.27) from Homo sapiens
Also see hits to annotated proteins above

 46% id,
98% cov

P49364: glycine cleavage system (subunit 1/4) (EC 1.4.1.27) from Pisum sativum
Also see hits to annotated proteins above

 45% id,
96% cov

More...

780-2186 (frame +3) on NC_016594.1
is similar to:		 PaperBLAST

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens
Also see hits to annotated proteins above

 40% id,
94% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus
Also see hits to annotated proteins above

 39% id,
94% cov

1367170-1369020 (frame +1) on NC_016594.1
is similar to:		 PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum
Also see hits to annotated proteins above

 28% id,
66% cov

228513-229826 (frame +3) on NC_016595.1
is similar to:		 PaperBLAST

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus
Also see hits to annotated proteins above

 22% id,
57% cov

764314-766581 (frame -3) on NC_016618.1
is similar to:		 PaperBLAST

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus
Also see hits to annotated proteins above

 33% id,
13% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens
Also see hits to annotated proteins above

 33% id,
13% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory