Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 23 curated entries in PaperBLAST's database that match '1.4.3.3' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS30970: glycine oxidase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

33% id,
96% cov

Q7X2D3: D-amino-acid oxidase (EC 1.4.3.3) from Glutamicibacter protophormiae

44% id,
21% cov

AZOBR_RS16460: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

25% id,
98% cov

AZOBR_RS27105: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

25% id,
91% cov

AZOBR_RS32385: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

amaD / Q88GX1: D-lysine oxidase (EC 1.4.3.3) from Pseudomonas putida

29% id,
32% cov

AZOBR_RS08020: D-amino acid dehydrogenase small subunit
is similar to:
PaperBLAST

Q7X2D3: D-amino-acid oxidase (EC 1.4.3.3) from Glutamicibacter protophormiae

50% id,
13% cov

P80324: D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides

41% id,
14% cov

Q99042: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

39% id,
13% cov

More...

AZOBR_RS27120: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

amaD / Q88GX1: D-lysine oxidase (EC 1.4.3.3) from Pseudomonas putida

38% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1691646-1693121 (frame +3) on NC_016617.1
is similar to:
PaperBLAST

amaD / Q88GX1: D-lysine oxidase (EC 1.4.3.3) from Pseudomonas putida
Also see hits to annotated proteins above

27% id,
100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory