Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 18 curated entries in PaperBLAST's database that match '2.1.1.13' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS16985: hypothetical protein
is similar to:		 PaperBLAST

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

 27% id,
76% cov

Q9WYA5: methionine synthase (EC 2.1.1.13) from Thermotoga maritima

 27% id,
26% cov

AZOBR_RS23990: ferredoxin
is similar to:		 PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

 35% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1999874-2002654 (frame +2) on NC_016617.1
is similar to:		 PaperBLAST

metH / Q8NQD1: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Corynebacterium glutamicum

 50% id,
79% cov

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens
Also see hits to annotated proteins above

 31% id,
100% cov

PGA1_c16040: Methionine synthase component, pterin-binding domain (EC:2.1.1.13) from Phaeobacter inhibens

 31% id,
91% cov

More...

1999120-2000991 (frame +1) on NC_016617.1
is similar to:		 PaperBLAST

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 38% id,
27% cov

metH / Q8NQD1: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Corynebacterium glutamicum

 50% id,
20% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 36% id,
27% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory