Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 48 curated entries in PaperBLAST's database that match '2.1.3.3' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS13250: ornithine carbamoyltransferase
is similar to:
PaperBLAST

OTCC_PSEAE / P08308: Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa

70% id,
100% cov

OTC2_ECOLI / P06960: Ornithine carbamoyltransferase subunit F; OTCase-2; EC 2.1.3.3 from Escherichia coli
ArgF / b0273: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli
argF / P06960: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli

59% id,
99% cov

OTC1_ECOLI / P04391: Ornithine carbamoyltransferase subunit I; OTCase-1; EC 2.1.3.3 from Escherichia coli
ArgI / b4254: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli
argI / GB|AAA23483.1: ornithine carbamoyltransferase, subunit I; EC 2.1.3.3 from Escherichia coli
argI / P04391: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli

58% id,
99% cov

More...

AZOBR_RS19030: ornithine carbamoyltransferase
is similar to:
PaperBLAST

Q98BB6: ornithine carbamoyltransferase (EC 2.1.3.3) from Mesorhizobium loti

60% id,
100% cov

OTCA_PSEAE / P11724: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa

51% id,
96% cov

O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi

53% id,
91% cov

More...

AZOBR_RS20575: aspartate carbamoyltransferase
is similar to:
PaperBLAST

OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus
Q51742: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus

31% id,
96% cov

O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi

31% id,
95% cov

OTC_MYCBO / P0A5M9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium bovis
OTC_MYCTU / P9WIT9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium tuberculosis
P0A5M9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis
P9WIT9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis

30% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory