Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 30 curated entries in PaperBLAST's database that match '2.3.3.13'.

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS12155: 2-isopropylmalate synthase
is similar to:
PaperBLAST

P9WQB3: 2-isopropylmalate synthase (EC 2.3.3.13) from Mycobacterium tuberculosis

57% id,
84% cov

LEU9_YEAST / Q12166: 2-isopropylmalate synthase 2, mitochondrial; Alpha-IPM synthase 2; Alpha-isopropylmalate synthase 2; Alpha-isopropylmalate synthase II; EC 2.3.3.13 from Saccharomyces cerevisiae

47% id,
92% cov

LEU1_YEAST / P06208: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Saccharomyces cerevisiae

47% id,
90% cov

More...

AZOBR_RS05495: homocitrate synthase
is similar to:
PaperBLAST

LEU1_SULAC / Q4JA78: 2-isopropylmalate synthase; IPMS; Alpha-isopropylmalate synthase; Alpha-IPM synthase; EC 2.3.3.13 from Sulfolobus acidocaldarius

42% id,
93% cov

A0A0G2T6D7: 2-isopropylmalate synthase (EC 2.3.3.13) from Solanum pennellii

36% id,
86% cov

K4CJ56: 2-isopropylmalate synthase (EC 2.3.3.13) from Solanum lycopersicum

34% id,
88% cov

More...

AZOBR_RS04265: 2-isopropylmalate synthase
is similar to:
PaperBLAST

LEU1_SULAC / Q4JA78: 2-isopropylmalate synthase; IPMS; Alpha-isopropylmalate synthase; Alpha-IPM synthase; EC 2.3.3.13 from Sulfolobus acidocaldarius

32% id,
95% cov

BT1861: 2-isopropylmalate synthase (EC 2.3.3.13) from Bacteroides thetaiotaomicron

29% id,
98% cov

Echvi_3833: 2-isopropylmalate synthase (EC 2.3.3.13) from Echinicola vietnamensis

32% id,
89% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2553279-2555057 (frame +3) on NC_016617.1
is similar to:
PaperBLAST

P9WQB3: 2-isopropylmalate synthase (EC 2.3.3.13) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

55% id,
87% cov

LEU1_YEAST / P06208: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Saccharomyces cerevisiae
Also see hits to annotated proteins above

45% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory