Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 66 curated entries in PaperBLAST's database that match '2.4.2.4'.

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS10375: glyceraldehyde-3-phosphate dehydrogenase
is similar to:
PaperBLAST

TYPH_LACRH / P19663: Thymidine phosphorylase; TdRPase; EC 2.4.2.4 from Lacticaseibacillus rhamnosus

71% id,
91% cov

AZOBR_RS09940: 5'-methylthioadenosine phosphorylase
is similar to:
PaperBLAST

MTIP_PSEAE / Q9HZK1: S-methyl-5'-thioinosine phosphorylase; 5'-methylthioinosine phosphorylase; MTI phosphorylase; MTIP; EC 2.4.2.44 from Pseudomonas aeruginosa
PA3004 / Q9HZK1: S-methyl-5'-thioinosine phosphorylase monomer (EC 2.4.2.44) from Pseudomonas aeruginosa
Q9HZK1: S-methyl-5'-thioinosine phosphorylase (EC 2.4.2.44) from Pseudomonas aeruginosa

38% id,
84% cov

AZOBR_RS08215: glycosyl transferase
is similar to:
PaperBLAST

ABF11690.1: 4-amino-4-deoxy-L-arabinosyltransferase (ArnT;ArnTCm;Rmet_4828) (EC 2.4.2.43)

25% id,
85% cov

ARNT_SALTY / O52327: Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Polymyxin resistance protein PmrK; Undecaprenyl phosphate-alpha-L-Ara4N transferase; EC 2.4.2.43 from Salmonella typhimurium
O52327: lipid IVA 4-amino-4-deoxy-L-arabinosyltransferase (EC 2.4.2.43) from Salmonella enterica

24% id,
65% cov

AAL34393.1: 4-amino-4-deoxy-L-arabinotransferase (ArnT) (EC 2.4.2.43)

24% id,
65% cov

More...

AZOBR_RS06295: queuine tRNA-ribosyltransferase
is similar to:
PaperBLAST

ATGT_HALVD / Q9C4M3: tRNA-guanine(15) transglycosylase; 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Archaeal tRNA-guanine transglycosylase; EC 2.4.2.48 from Haloferax volcanii
Q9C4M3: tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Haloferax volcanii

28% id,
72% cov

Q8THU2: tRNA-guanosine34 preQ1 transglycosylase (subunit 2/2) (EC 2.4.2.29); tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Methanosarcina acetivorans

27% id,
67% cov

ATGT_METJA / Q57878: tRNA-guanine(15) transglycosylase; 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Archaeal tRNA-guanine transglycosylase; EC 2.4.2.48 from Methanocaldococcus jannaschii
tgtA / Q57878: 7-cyano-7-deazaguanine tRNA-ribosyltransferase monomer (EC 2.4.2.48) from Methanocaldococcus jannaschii
Q57878: tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Methanocaldococcus jannaschii

26% id,
51% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1409414-1410466 (frame +2) on NC_016617.1
is similar to:
PaperBLAST

Ttg / b4382: thymidine phosphorylase (EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli
deoA / GB|AAC77335.1: thymidine phosphorylase; EC 2.4.2.4 from Escherichia coli
P07650: thymidine phosphorylase (EC 2.4.2.4) from Escherichia coli

62% id,
44% cov

Q7CP66: thymidine phosphorylase (EC 2.4.2.4) from Salmonella enterica

62% id,
44% cov

Q99N42: thymidine phosphorylase (EC 2.4.2.4) from Mus musculus

51% id,
44% cov

More...

1410354-1411127 (frame +3) on NC_016617.1
is similar to:
PaperBLAST

Ttg / b4382: thymidine phosphorylase (EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli
deoA / GB|AAC77335.1: thymidine phosphorylase; EC 2.4.2.4 from Escherichia coli
P07650: thymidine phosphorylase (EC 2.4.2.4) from Escherichia coli

45% id,
57% cov

Q7CP66: thymidine phosphorylase (EC 2.4.2.4) from Salmonella enterica

45% id,
57% cov

TYPH_HUMAN / P19971: Thymidine phosphorylase; TP; Gliostatin; Platelet-derived endothelial cell growth factor; PD-ECGF; TdRPase; EC 2.4.2.4 from Homo sapiens
P19971: thymidine phosphorylase (EC 2.4.2.4) from Homo sapiens

35% id,
51% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory