Curated BLAST for Genomes


Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 26 curated entries in PaperBLAST's database that match ''.

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS04905: aminotransferase class V
is similar to:

P74281: phosphoserine transaminase (EC from Synechocystis sp.

24% id,
67% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2247398-2248564 (frame -1) on NC_016617.1
is similar to:

serC / Q8TNI1: phosphoserine aminotransferase monomer (EC; EC from Methanosarcina acetivorans

59% id,
95% cov

SERC_METBF / P52878: Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC from Methanosarcina barkeri
P52878: phosphoserine transaminase (EC from Methanosarcina barkeri

58% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory