Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 31 curated entries in PaperBLAST's database that match '2.7.1.15' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS30840: hypothetical protein
is similar to:
PaperBLAST

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

29% id,
96% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

28% id,
96% cov

SMc01103: Ribokinase (EC 2.7.1.15) from Sinorhizobium meliloti

27% id,
98% cov

More...

AZOBR_RS29860: ketodeoxygluconokinase
is similar to:
PaperBLAST

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

26% id,
94% cov

RBSK_ARATH / A1A6H3: Ribokinase; AtRBSK; RK; EC 2.7.1.15 from Arabidopsis thaliana
RBSK / A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana
A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana

23% id,
78% cov

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

32% id,
44% cov

More...

AZOBR_RS01550: carbohydrate kinase
is similar to:
PaperBLAST

BPHYT_RS25805: deoxyribose kinase (EC 2.7.1.15) from Burkholderia phytofirmans

28% id,
88% cov

RBSK_ARATH / A1A6H3: Ribokinase; AtRBSK; RK; EC 2.7.1.15 from Arabidopsis thaliana
RBSK / A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana
A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana

28% id,
70% cov

RBSK_YEAST / P25332: Ribokinase; RK; EC 2.7.1.15 from Saccharomyces cerevisiae

27% id,
44% cov

AZOBR_RS33905: D-beta-D-heptose 1-phosphate adenosyltransferase
is similar to:
PaperBLAST

RBSK_ARATH / A1A6H3: Ribokinase; AtRBSK; RK; EC 2.7.1.15 from Arabidopsis thaliana
RBSK / A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana
A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana

28% id,
77% cov

AZOBR_RS07045: phosphomethylpyrimidine kinase
is similar to:
PaperBLAST

BPHYT_RS25805: deoxyribose kinase (EC 2.7.1.15) from Burkholderia phytofirmans

26% id,
69% cov

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

25% id,
62% cov

AZOBR_RS03940: D-beta-D-heptose 1-phosphate adenosyltransferase
is similar to:
PaperBLAST

RBSK_YEAST / P25332: Ribokinase; RK; EC 2.7.1.15 from Saccharomyces cerevisiae

28% id,
34% cov

AZOBR_RS14110: pyridoxamine kinase
is similar to:
PaperBLAST

RBSK_ARATH / A1A6H3: Ribokinase; AtRBSK; RK; EC 2.7.1.15 from Arabidopsis thaliana
RBSK / A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana
A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana

27% id,
32% cov

A0A0H2UL04: ribokinase (EC 2.7.1.15) from Vibrio cholerae

35% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

621965-622570 (frame +2) on NC_016596.1
is similar to:
PaperBLAST

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens
Also see hits to annotated proteins above

29% id,
61% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens
Also see hits to annotated proteins above

33% id,
49% cov

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens
Also see hits to annotated proteins above

28% id,
49% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory