Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 128 curated entries in PaperBLAST's database that match '3.2.1.28' as complete word(s).

These curated entries have 75 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS25735: alpha-amylase
is similar to:
PaperBLAST

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

56% id,
100% cov

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

41% id,
95% cov

AZOBR_RS22875: glucoamylase
is similar to:
PaperBLAST

TREH_MYCS2 / A0R0W9: Trehalase; Alpha,alpha-trehalase; Alpha,alpha-trehalose glucohydrolase; EC 3.2.1.28 from Mycolicibacterium smegmatis
ABK72415.1: α,α-trehalase (MSMEG_4535;MSMEG4528) (EC 3.2.1.28)

40% id,
92% cov

TREH_THEAC / Q9HLE2: Trehalase; Alpha,alpha-trehalase; EC 3.2.1.28 from Thermoplasma acidophilum

36% id,
98% cov

TREH_MYCTU / P71741: Trehalase; Alpha,alpha-trehalase; Alpha,alpha-trehalose glucohydrolase; EC 3.2.1.28 from Mycobacterium tuberculosis

39% id,
91% cov

More...

AZOBR_RS09450: alpha-amylase
is similar to:
PaperBLAST

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

35% id,
63% cov

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

41% id,
45% cov

AZOBR_RS04510: trehalose synthase
is similar to:
PaperBLAST

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

49% id,
38% cov

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

46% id,
37% cov

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

30% id,
36% cov

AZOBR_RS16610: fused trehalose maltokinase and malto-oligosyltrehalose trehalohydrolase
is similar to:
PaperBLAST

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

27% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

141918-144167 (frame -1) on NC_016618.1
is similar to:
PaperBLAST

TREH_MYCS2 / A0R0W9: Trehalase; Alpha,alpha-trehalase; Alpha,alpha-trehalose glucohydrolase; EC 3.2.1.28 from Mycolicibacterium smegmatis
ABK72415.1: α,α-trehalase (MSMEG_4535;MSMEG4528) (EC 3.2.1.28)
Also see hits to annotated proteins above

39% id,
98% cov

TREH_MYCTU / P71741: Trehalase; Alpha,alpha-trehalase; Alpha,alpha-trehalose glucohydrolase; EC 3.2.1.28 from Mycobacterium tuberculosis
Also see hits to annotated proteins above

37% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory