Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 14 curated entries in PaperBLAST's database that match '3.2.1.48' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS25735: alpha-amylase
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

41% id,
95% cov

Q6UVM5: sucrose alpha-glucosidase (EC 3.2.1.48) from Xanthomonas axonopodis

29% id,
47% cov

AZOBR_RS09450: alpha-amylase
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

41% id,
45% cov

Q6UVM5: sucrose alpha-glucosidase (EC 3.2.1.48) from Xanthomonas axonopodis

32% id,
45% cov

AZOBR_RS04510: trehalose synthase
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

46% id,
37% cov

Q6UVM5: sucrose alpha-glucosidase (EC 3.2.1.48) from Xanthomonas axonopodis

31% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

946024-947751 (frame +1) on NC_016617.1
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae
Also see hits to annotated proteins above

46% id,
39% cov

2814512-2816683 (frame +2) on NC_016617.1
is similar to:
PaperBLAST

Q6UVM5: sucrose alpha-glucosidase (EC 3.2.1.48) from Xanthomonas axonopodis
Also see hits to annotated proteins above

30% id,
26% cov

234045-235589 (frame -3) on NC_016595.1
is similar to:
PaperBLAST

B5THE3: sucrose alpha-glucosidase (EC 3.2.1.48) from Mus musculus

28% id,
17% cov

BAA25370.1: sucrase-isomaltase (SI) (EC 3.2.1.10|3.2.1.48)

28% id,
16% cov

AAT18166.1: sucrase-isomaltase (SI) (EC 3.2.1.10|3.2.1.48)

28% id,
16% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory