Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 34 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS27535: amino acid decarboxylase is similar to:	PaperBLAST
A4Q8H0: ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens	43% id, 99% cov
SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli speC / P21169: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli P21169: ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli	45% id, 94% cov
DCOS_ECOLI / P24169: Inducible ornithine decarboxylase; EC 4.1.1.17 from Escherichia coli SpeF / b0693: inducible ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli speF / P24169: inducible ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli	45% id, 92% cov
H8ZI01: ornithine decarboxylase (EC 4.1.1.17) from Lactobacillus brevis	45% id, 89% cov
Q5ZH57: ornithine decarboxylase (EC 4.1.1.17) from Oenococcus oeni	44% id, 90% cov
P43099: ornithine decarboxylase (EC 4.1.1.17) from Lactobacillus saerimneri	41% id, 94% cov
Q038E5: ornithine decarboxylase (EC 4.1.1.17) from Lactobacillus casei	33% id, 96% cov
More...

AZOBR_RS00105: ornithine decarboxylase is similar to:	PaperBLAST
DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster	32% id, 93% cov
DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans	33% id, 89% cov
DCOR1_XENLA / P27120: Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis	34% id, 83% cov
DCOR_SOLLC / O22616: Ornithine decarboxylase; ODC; LeODC; EC 4.1.1.17 from Solanum lycopersicum odc / O22616: ornithine decarboxylase (EC 4.1.1.17) from Solanum lycopersicum	33% id, 83% cov
DCOR_HUMAN / P11926: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Homo sapiens ODC1 / P11926: ornithine decarboxylase subunit (EC 4.1.1.17) from Homo sapiens P11926: ornithine decarboxylase (EC 4.1.1.17) from Homo sapiens	34% id, 78% cov
P09057: ornithine decarboxylase (EC 4.1.1.17) from Rattus norvegicus	34% id, 78% cov
W5Q1G7: ornithine decarboxylase (EC 4.1.1.17) from Ovis aries	34% id, 78% cov
AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans	33% id, 80% cov
ODC_NICGU / Q9FPK5: Ornithine decarboxylase, chloroplastic; Lysine decarboxylase; EC 4.1.1.17; EC 4.1.1.18 from Nicotiana glutinosa Q9FPK5: ornithine decarboxylase (EC 4.1.1.17) from Nicotiana glutinosa	32% id, 83% cov
DCOR_CAPAN / Q8S3N2: Ornithine decarboxylase; ODC; CaODC1; CapODC; EC 4.1.1.17 from Capsicum annuum ODC / Q8S3N2: ornithine decarboxylase (EC 4.1.1.17) from Capsicum annuum	32% id, 82% cov
ODC_NICGL / E0WN94: Ornithine decarboxylase, chloroplastic; EC 4.1.1.17 from Nicotiana glauca	32% id, 83% cov
ODC1B_TOBAC / P93351: Ornithine decarboxylase 1B, chloroplastic; Nt-ODC; EC 4.1.1.17 from Nicotiana tabacum	32% id, 83% cov
DCOR_MOUSE / P00860: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus P00860: ornithine decarboxylase (EC 4.1.1.17) from Mus musculus	33% id, 78% cov
ODC1A_TOBAC / A0A1S4AUX8: Ornithine decarboxylase 1A, chloroplastic; EC 4.1.1.17 from Nicotiana tabacum	31% id, 83% cov
ODC / P50134: ornithine decarboxylase (EC 4.1.1.17) from Datura stramonium	31% id, 83% cov
C9W982: ornithine decarboxylase (EC 4.1.1.17) from Grateloupia imbricata	31% id, 82% cov
Q58P26: ornithine decarboxylase (EC 4.1.1.17) from Entamoeba histolytica	29% id, 87% cov
SPE1 / GB\|AAC49877.1: ornithine decarboxylase (ODC); EC 4.1.1.17 from Candida albicans	31% id, 81% cov
DCOR_YEAST / P08432: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Saccharomyces cerevisiae SPE1 / P08432: ornithine decarboxylase (EC 4.1.1.17) from Saccharomyces cerevisiae P08432: ornithine decarboxylase (EC 4.1.1.17) from Saccharomyces cerevisiae	31% id, 80% cov
Q54UF3: ornithine decarboxylase (EC 4.1.1.17) from Dictyostelium discoideum	31% id, 77% cov
DCOR_TRYBB / P07805: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Trypanosoma brucei	36% id, 67% cov
A8J7E8: ornithine decarboxylase (EC 4.1.1.17) from Chlamydomonas reinhardtii	33% id, 69% cov
G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca	32% id, 66% cov
A0A1E1IR91: ornithine decarboxylase (EC 4.1.1.17) from Leishmania guyanensis	32% id, 53% cov
DCOR_LEIDO / P27116: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Leishmania donovani P27116: ornithine decarboxylase (EC 4.1.1.17) from Leishmania donovani	30% id, 54% cov
P90517: ornithine decarboxylase (EC 4.1.1.17) from Crithidia fasciculata	29% id, 47% cov
Q9U8D4: ornithine decarboxylase (EC 4.1.1.17); adenosylmethionine decarboxylase (EC 4.1.1.50) from Plasmodium falciparum	33% id, 15% cov
More...

AZOBR_RS10225: diaminopimelate decarboxylase is similar to:	PaperBLAST
DCOR_YEAST / P08432: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Saccharomyces cerevisiae SPE1 / P08432: ornithine decarboxylase (EC 4.1.1.17) from Saccharomyces cerevisiae P08432: ornithine decarboxylase (EC 4.1.1.17) from Saccharomyces cerevisiae	38% id, 13% cov
SPE1 / GB\|AAC49877.1: ornithine decarboxylase (ODC); EC 4.1.1.17 from Candida albicans	37% id, 11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

10334-11548 (frame +2) on NC_016617.1 is similar to:	PaperBLAST
DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster Also see hits to annotated proteins above	32% id, 96% cov
DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans Also see hits to annotated proteins above	33% id, 90% cov
DCOR_SOLLC / O22616: Ornithine decarboxylase; ODC; LeODC; EC 4.1.1.17 from Solanum lycopersicum odc / O22616: ornithine decarboxylase (EC 4.1.1.17) from Solanum lycopersicum Also see hits to annotated proteins above	31% id, 95% cov
DCOR_HUMAN / P11926: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Homo sapiens ODC1 / P11926: ornithine decarboxylase subunit (EC 4.1.1.17) from Homo sapiens P11926: ornithine decarboxylase (EC 4.1.1.17) from Homo sapiens Also see hits to annotated proteins above	33% id, 83% cov
P09057: ornithine decarboxylase (EC 4.1.1.17) from Rattus norvegicus Also see hits to annotated proteins above	33% id, 83% cov
W5Q1G7: ornithine decarboxylase (EC 4.1.1.17) from Ovis aries Also see hits to annotated proteins above	32% id, 83% cov
DCOR_MOUSE / P00860: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus P00860: ornithine decarboxylase (EC 4.1.1.17) from Mus musculus Also see hits to annotated proteins above	32% id, 83% cov
SPE1 / GB\|AAC49877.1: ornithine decarboxylase (ODC); EC 4.1.1.17 from Candida albicans Also see hits to annotated proteins above	30% id, 86% cov
Q54UF3: ornithine decarboxylase (EC 4.1.1.17) from Dictyostelium discoideum Also see hits to annotated proteins above	31% id, 80% cov
A0A1E1IR91: ornithine decarboxylase (EC 4.1.1.17) from Leishmania guyanensis Also see hits to annotated proteins above	31% id, 54% cov
More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory