Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 12 curated entries in PaperBLAST's database that match '4.1.1.43' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS04230: indole-3-pyruvate decarboxylase
is similar to:
PaperBLAST

ipdC / P51852: phenylpyruvate decarboxylase (EC 4.1.1.43) from Azospirillum brasilense

100% id,
100% cov

PDC1_YEAST / P06169: Pyruvate decarboxylase isozyme 1; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74 from Saccharomyces cerevisiae
PDC1 / P06169: pyruvate decarboxylase (EC 4.1.1.1; EC 4.1.1.80; EC 4.1.1.43; EC 4.1.1.74; EC 4.1.1.72) from Saccharomyces cerevisiae

26% id,
99% cov

PDC5_YEAST / P16467: Pyruvate decarboxylase isozyme 2; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74 from Saccharomyces cerevisiae
PDC5 / P16467: pyruvate decarboxylase 2 monomer (EC 4.1.1.1; EC 4.1.1.43; EC 4.1.1.74; EC 4.1.1.72) from Saccharomyces cerevisiae

26% id,
96% cov

More...

AZOBR_RS04795: acetoin:2 6-dichlorophenolindophenol oxidoreductase subunit alpha
is similar to:
PaperBLAST

A0A222AKA3: phenylpyruvate decarboxylase (EC 4.1.1.43) from Streptomyces virginiae

30% id,
83% cov

AZOBR_RS25395: acetoin dehydrogenase
is similar to:
PaperBLAST

A0A222AKA3: phenylpyruvate decarboxylase (EC 4.1.1.43) from Streptomyces virginiae

31% id,
78% cov

AZOBR_RS22245: pyruvate dehydrogenase E1 subunit alpha
is similar to:
PaperBLAST

A0A222AKA3: phenylpyruvate decarboxylase (EC 4.1.1.43) from Streptomyces virginiae

32% id,
56% cov

AZOBR_RS06560: acetolactate synthase
is similar to:
PaperBLAST

ipdC / P51852: phenylpyruvate decarboxylase (EC 4.1.1.43) from Azospirillum brasilense

25% id,
63% cov

PDC5_YEAST / P16467: Pyruvate decarboxylase isozyme 2; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74 from Saccharomyces cerevisiae
PDC5 / P16467: pyruvate decarboxylase 2 monomer (EC 4.1.1.1; EC 4.1.1.43; EC 4.1.1.74; EC 4.1.1.72) from Saccharomyces cerevisiae

23% id,
53% cov

PDC1_YEAST / P06169: Pyruvate decarboxylase isozyme 1; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74 from Saccharomyces cerevisiae
PDC1 / P06169: pyruvate decarboxylase (EC 4.1.1.1; EC 4.1.1.80; EC 4.1.1.43; EC 4.1.1.74; EC 4.1.1.72) from Saccharomyces cerevisiae

23% id,
53% cov

More...

AZOBR_RS31945: oxalyl-CoA decarboxylase
is similar to:
PaperBLAST

PDC5_YEAST / P16467: Pyruvate decarboxylase isozyme 2; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74 from Saccharomyces cerevisiae
PDC5 / P16467: pyruvate decarboxylase 2 monomer (EC 4.1.1.1; EC 4.1.1.43; EC 4.1.1.74; EC 4.1.1.72) from Saccharomyces cerevisiae

24% id,
48% cov

AZOBR_RS29985: pyruvate oxidase
is similar to:
PaperBLAST

ARO10_YEAST / Q06408: Transaminated amino acid decarboxylase; Thiamine diphosphate-dependent phenylpyruvate decarboxylase; PPDC; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; Transaminated branched-chain amino acid decarboxylase; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74; EC 4.1.1.80 from Saccharomyces cerevisiae
ARO10 / Q06408: 2-keto-3-methylvalerate decarboxylase subunit (EC 4.1.1.1; EC 4.1.1.74; EC 4.1.1.43; EC 4.1.1.72) from Saccharomyces cerevisiae
Q06408: phenylpyruvate decarboxylase (EC 4.1.1.43) from Saccharomyces cerevisiae

24% id,
46% cov

AZOBR_RS32510: sulfoacetaldehyde acetyltransferase
is similar to:
PaperBLAST

ipdC / P51852: phenylpyruvate decarboxylase (EC 4.1.1.43) from Azospirillum brasilense

27% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

752477-753496 (frame +2) on NC_016618.1
is similar to:
PaperBLAST

A0A222AKA3: phenylpyruvate decarboxylase (EC 4.1.1.43) from Streptomyces virginiae
Also see hits to annotated proteins above

31% id,
84% cov

1815005-1815253 (frame -1) on NC_016617.1
is similar to:
PaperBLAST

A0A222AKA3: phenylpyruvate decarboxylase (EC 4.1.1.43) from Streptomyces virginiae
Also see hits to annotated proteins above

41% id,
17% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory